Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 3601.2 1813 100.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 3139.0 1822 87.0
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 3127.0 1831 86.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 3061.2 1923 81.5
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 3031.1 1818 83.7
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 3018.0 1818 83.9
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2957.5 1819 81.7
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2949.5 1833 81.0
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2907.9 1825 79.9
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2904.4 1819 80.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2904.0 1820 80.1
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2882.8 1822 79.5
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2881.3 1818 79.5
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2880.9 1818 79.4
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2869.7 1819 79.6
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2867.0 1820 78.8
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2863.2 1765 81.5
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2860.9 1805 79.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2860.5 1818 78.9
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2849.7 1821 78.8
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2848.5 1821 78.8
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2847.8 1818 78.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2845.1 1821 78.7
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2843.9 1821 78.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2832.7 1820 78.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2805.4 1858 77.8
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2805.0 1805 78.8
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2801.2 1774 79.9
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2787.7 1824 77.0
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2786.9 1818 77.8
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2780.7 1814 76.1
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2766.1 1821 75.8
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2761.1 1818 76.0
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2760.7 1818 76.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2759.2 1820 75.6
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2754.2 1814 75.7
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2749.9 1820 75.1
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2748.4 1820 75.3
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2746.8 1973 71.4
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2744.9 1821 75.2
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2743.4 1758 78.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2743.0 1818 75.0
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2734.9 1819 75.0
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2724.9 1819 74.9
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2723.0 1561 88.9
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2721.4 1819 75.1
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2719.5 1817 75.3
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2715.3 1815 74.9
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2706.8 1819 74.1
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2702.2 1817 74.6
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2695.6 1818 73.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2694.5 1817 74.2
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2687.5 1827 74.0
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2686.8 1893 73.3
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2681.7 1817 73.7
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2678.7 1815 74.0
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2674.4 1900 71.4
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2673.7 1821 74.0
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2662.9 1676 80.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2660.9 1804 74.5
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2655.2 1816 73.1
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2654.4 1822 74.0
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2653.6 1815 73.3
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2651.3 1762 75.2
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2648.6 1821 73.1
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2642.1 1812 73.7
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2641.7 1822 73.1
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2636.3 1816 72.2
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2634.4 1822 72.9
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2633.6 1846 72.9
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2630.1 1820 72.8
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2627.0 1820 72.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2626.7 1822 72.9
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2625.9 1821 72.9
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2625.9 1819 72.6
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2623.2 1821 72.9
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2622.4 1819 72.5
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2617.8 1821 72.0
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2613.2 1833 71.3
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2609.3 1819 72.1
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2594.3 1817 72.0
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2588.5 1823 72.0
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2588.5 1836 72.6
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2580.4 1945 68.8
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2578.9 1792 72.7
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2553.5 1826 71.1
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2552.7 1814 71.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2535.8 1856 69.7
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2533.8 1820 70.3
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2530.0 1626 78.8
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2509.9 1904 68.7
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2470.7 1840 67.6
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2427.9 1653 74.9
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2395.9 1821 66.3
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2383.2 1829 65.9
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2301.6 1679 70.1
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2275.4 1740 68.7
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2255.3 1517 74.4
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2186.0 1440 75.1
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2171.0 1818 60.7
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1906.7 1253 77.0
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1838.2 1146 78.5
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1835.5 1452 64.8
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1799.6 1818 54.3
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1494.2 944 77.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1438.3 1928 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1434.9 1856 43.8
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1424.8 1855 42.8
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1343.2 1877 39.9
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1272.3 1840 40.3
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1243.8 865 74.1
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1199.5 1864 38.6
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1164.8 1838 37.6
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1109.7 945 62.8
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1079.3 713 74.5
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 8.7e-311 1071.2 1836 35.7
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 5.4e-281 972.2 1968 33.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 9.1e-281 971.5 1192 49.5
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 3.6e-261 906.4 694 63.8
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.5e-214 751.5 618 68.3
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 6.5e-210 736.1 504 74.8
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 5.4e-148 530.4 640 50.3
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.1e-138 497.3 458 53.9
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.1e-128 465.3 339 72.9
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 6.2e-120 437.2 321 67.6
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.6e-118 430.3 301 73.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.4e-117 426.8 1926 24.9
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-111 409.8 470 47.4
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.0e-106 393.3 220 81.4
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.3e-104 386.3 272 71.3
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.4e-103 382.9 250 80.8
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.4e-89 334.0 226 73.0
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 5.5e-84 317.8 1692 23.2
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.6e-83 314.7 359 53.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 5.9e-78 297.7 344 52.0
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.7e-78 297.4 166 84.9
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.5e-41 174.5 212 50.9
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.7e-37 163.3 138 63.0
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 2.5e-36 159.5 100 80.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.0e-34 152.1 1989 20.2
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.2e-33 150.6 646 24.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.6e-27 129.0 68 92.6
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 8.3e-24 117.9 76 72.4
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.6e-22 113.6 65 87.7
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 6.0e-22 111.7 94 66.0
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.0e-21 109.4 75 73.3
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 5.6e-20 105.1 164 42.7
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 1.6e-19 103.6 186 40.3
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.6e-19 103.6 71 76.1
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 4.7e-19 102.1 75 64.0
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 7.6e-17 94.7 96 52.1
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 9.9e-17 94.4 167 40.7
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.6e-14 85.5 73 50.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 4.3e-12 79.0 171 36.8
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 4.3e-12 79.0 62 54.8
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 4.7e-11 75.5 45 73.3
Actinidia23168 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.8e-06 58.2 44 65.9


User provided reference genes

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