Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018321 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.6e-61 238.4 111 100.0
CSS0018700 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.2e-47 193.0 143 68.5
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.9e-29 130.2 62 98.4
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.9e-29 130.2 62 98.4
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.9e-28 127.9 62 96.8
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 6.4e-28 127.5 62 95.2
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.4e-27 126.3 62 96.8
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 93.5
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 93.5
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 91.9
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 91.9
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 91.9
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 3.2e-27 125.2 62 91.9
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 4.2e-27 124.8 62 93.5
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 4.2e-27 124.8 61 91.8
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 4.2e-27 124.8 62 91.9
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 7.1e-27 124.0 62 91.9
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 9.3e-27 123.6 62 90.3
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 9.3e-27 123.6 62 90.3
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 9.3e-27 123.6 62 90.3
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 9.3e-27 123.6 62 90.3
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.2e-26 123.2 61 91.8
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 1.2e-26 123.2 62 91.9
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 91.9
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 91.9
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 90.3
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 88.7
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 1.6e-26 122.9 61 91.8
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 1.6e-26 122.9 61 91.8
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 90.3
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 1.6e-26 122.9 62 91.9
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 2.1e-26 122.5 62 90.3
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 2.7e-26 122.1 62 88.7
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 3.5e-26 121.7 62 90.3
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 3.5e-26 121.7 62 85.5
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 3.5e-26 121.7 61 90.2
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 3.5e-26 121.7 62 88.7
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 3.5e-26 121.7 62 88.7
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 4.6e-26 121.3 62 88.7
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 4.6e-26 121.3 61 90.2
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 4.6e-26 121.3 62 87.1
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 4.6e-26 121.3 62 87.1
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 4.6e-26 121.3 61 90.2
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 4.6e-26 121.3 62 90.3
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 6.0e-26 120.9 62 90.3
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 7.9e-26 120.6 62 93.5
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 7.9e-26 120.6 61 90.2
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 7.9e-26 120.6 62 87.1
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 1.0e-25 120.2 62 87.1
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 1.0e-25 120.2 61 88.5
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 1.0e-25 120.2 62 88.7
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 1.0e-25 120.2 61 88.5
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 1.0e-25 120.2 61 88.5
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 1.0e-25 120.2 61 88.5
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 1.3e-25 119.8 62 87.1
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 1.3e-25 119.8 62 90.3
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 1.8e-25 119.4 62 80.6
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 1.8e-25 119.4 62 87.1
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 1.8e-25 119.4 61 88.5
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 2.3e-25 119.0 61 88.5
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 2.3e-25 119.0 62 80.6
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 2.3e-25 119.0 61 88.5
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 3.0e-25 118.6 61 85.2
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 5.1e-25 117.9 62 88.7
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 5.1e-25 117.9 61 85.2
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 5.1e-25 117.9 61 85.2
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 5.1e-25 117.9 62 80.6
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 5.1e-25 117.9 62 83.9
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 5.1e-25 117.9 61 86.9
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 6.7e-25 117.5 62 87.1
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 6.7e-25 117.5 61 86.9
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 6.7e-25 117.5 61 85.2
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 8.7e-25 117.1 62 80.6
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 8.7e-25 117.1 62 80.6
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 1.1e-24 116.7 62 79.0
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 1.1e-24 116.7 61 85.2
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 1.1e-24 116.7 61 83.6
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 1.5e-24 116.3 61 83.6
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 83.6
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 1.9e-24 115.9 62 79.0
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 83.6
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 85.2
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 85.2
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 85.2
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 85.2
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 1.9e-24 115.9 61 85.2
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 2.5e-24 115.5 61 83.6
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 77.4
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 79.0
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 79.0
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 79.0
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 79.0
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 2.5e-24 115.5 62 79.0
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 3.3e-24 115.2 61 82.0
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 5.6e-24 114.4 61 82.0
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 5.6e-24 114.4 62 82.3
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 5.6e-24 114.4 62 82.3
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 9.6e-24 113.6 61 80.3
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 9.6e-24 113.6 61 85.2
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 9.6e-24 113.6 61 80.3
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 1.3e-23 113.2 61 82.0
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 1.6e-23 112.8 61 83.6
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 1.6e-23 112.8 62 79.0
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 4.8e-23 111.3 62 77.4
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 4.8e-23 111.3 74 71.6
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 6.2e-23 110.9 62 79.0
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 8.2e-23 110.5 63 79.4
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 1.8e-22 109.4 86 66.3
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 1.8e-22 109.4 51 96.1
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 1.8e-22 109.4 63 77.8
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 9.0e-22 107.1 61 72.1
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 2.2e-20 102.4 48 95.8
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 4.9e-20 101.3 91 58.2
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 8.4e-20 100.5 82 59.8
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 1.1e-19 100.1 49 91.8
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.9e-19 99.4 62 74.2
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 1.8e-17 92.8 49 83.7
CDE06G1738 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 6.7e-17 90.9 46 87.0
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 1.9e-16 89.4 49 77.6
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 3.3e-16 88.6 62 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 3.7e-15 85.1 61 57.4
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 3.7e-15 85.1 55 67.3
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 3.1e-14 82.0 48 72.9
MSTRG.8637 Avicennia marina HOM05D000645 ORTHO05D000494 1.4e-06 56.6 44 50.0
Os04g0678300 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 1.8e-06 56.2 57 38.6
Zm00001eb433820 Zea mays HOM05D000645 ORTHO05D000494 1.8e-06 56.2 57 38.6
Zm00001eb066110 Zea mays HOM05D000645 ORTHO05D000494 4.1e-06 55.1 52 42.3
AL8G29430 Arabidopsis lyrata HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
AT5G54200 Arabidopsis thaliana HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
BcaB01g04283 Brassica carinata HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
BcaC01g06293 Brassica carinata HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
A03p14770 Brassica napus HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
BolC3t14139H Brassica oleracea HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
BraA03t10769Z Brassica rapa HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
CARHR267420 Cardamine hirsuta HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
Sp6g16260 Schrenkiella parvula HOM05D000645 ORTHO05D000494 6.9e-06 54.3 57 38.6
BcaB08g35775 Brassica carinata HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
Carub.0008s1452 Capsella rubella HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
FvH4_3g20610 Fragaria vesca HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
FAN11G2895 Fragaria x ananassa HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
FAN16G0920 Fragaria x ananassa HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
FAN25G3556 Fragaria x ananassa HOM05D000645 ORTHO05D000494 9.1e-06 53.9 57 38.6
Nitab4.5_0002780g0050 Nicotiana tabacum HOM05D000645 ORTHO05D000494 9.1e-06 53.9 49 44.9


User provided reference genes

Program Settings