Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.8e-162 573.5 286 100.0
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.4e-140 500.4 288 89.6
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.0e-48 198.0 276 44.2
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.9e-48 196.4 272 45.2
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 4.2e-47 192.6 275 41.8
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 4.2e-47 192.6 275 41.8
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 6.1e-46 188.7 277 43.3
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.1e-45 185.7 272 41.9
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.2e-43 178.3 273 41.8
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 5.3e-42 175.6 280 39.6
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.9e-42 175.3 277 40.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.7e-41 171.8 277 40.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.7e-40 170.6 275 38.5
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 2.9e-40 169.9 279 37.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.1e-39 167.9 302 37.1
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 5.5e-39 165.6 282 37.6
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 5.5e-39 165.6 288 39.6
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.1e-38 163.7 286 36.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.7e-38 163.3 268 35.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 6.1e-38 162.2 317 36.3
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.1e-38 162.2 286 35.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.0e-37 161.4 287 38.3
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.4e-37 161.0 275 39.6
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.4e-37 161.0 289 39.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.8e-37 160.6 272 36.4
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.8e-37 160.6 282 37.9
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.3e-37 160.2 292 38.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.0e-37 159.8 295 38.3
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 3.9e-37 159.5 278 36.7
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.2e-37 159.1 289 38.4
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.1e-36 157.9 305 34.8
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 1.1e-36 157.9 290 34.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.5e-36 157.5 274 39.1
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.6e-36 156.8 269 35.3
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 3.3e-36 156.4 271 39.1
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 4.4e-36 156.0 308 34.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 5.7e-36 155.6 276 39.5
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 4.8e-35 152.5 285 34.7
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 6.3e-35 152.1 317 35.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.1e-34 151.4 322 35.1
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.2e-33 147.9 281 34.9
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.6e-33 147.5 274 35.4
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.0e-33 147.1 268 36.2
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.6e-33 146.7 316 35.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.5e-33 146.0 303 35.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.0e-32 144.8 271 35.1
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.0e-32 144.8 307 33.9
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.3e-32 144.4 303 35.0
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.3e-32 144.4 285 32.6
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.2e-32 143.7 303 35.0
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 8.5e-32 141.7 310 34.8
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.1e-31 141.4 273 34.8
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.5e-31 140.2 266 35.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 3.2e-31 139.8 305 32.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 5.5e-31 139.0 274 33.2
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 9.4e-31 138.3 266 35.3
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 8.0e-30 135.2 266 36.1
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 8.0e-30 135.2 272 33.8
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 8.0e-30 135.2 151 47.0
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 8.0e-30 135.2 187 41.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.4e-29 134.4 302 33.1
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.8e-29 134.0 282 33.7
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.3e-29 133.7 391 27.1
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 5.2e-29 132.5 293 34.8
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 3.3e-28 129.8 272 34.9
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.3e-28 129.8 272 32.7
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 3.3e-28 129.8 272 33.5
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 4.4e-28 129.4 303 33.0
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.4e-28 129.4 187 40.6
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 9.7e-28 128.3 273 34.4
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 9.7e-28 128.3 267 34.8
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 9.7e-28 128.3 278 33.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.2e-27 127.1 272 34.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.8e-27 126.7 282 34.0
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.8e-27 126.7 270 35.9
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.7e-27 126.3 290 33.8
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.4e-26 124.4 281 30.6
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.8e-26 124.0 291 33.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.8e-26 124.0 275 32.4
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.4e-26 123.6 278 32.7
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.4e-26 123.6 187 39.0
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 3.1e-26 123.2 279 33.3
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 3.1e-26 123.2 270 32.6
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.1e-26 122.9 271 31.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 4.1e-26 122.9 314 29.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 7.0e-26 122.1 291 32.3
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 9.1e-26 121.7 313 31.3
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 9.1e-26 121.7 277 34.3
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.6e-25 120.9 278 33.5
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 2.7e-25 120.2 313 28.1
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 2.7e-25 120.2 313 28.1
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.7e-25 120.2 385 27.0
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.5e-25 119.8 272 32.4
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.0e-24 118.2 409 26.9
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.7e-24 117.5 323 28.2
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.7e-24 117.5 305 32.5
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.7e-24 117.5 314 28.0
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.8e-24 116.3 271 32.5
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.8e-24 116.3 191 40.8
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 6.5e-24 115.5 271 33.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.5e-23 114.4 147 42.2
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.5e-23 114.4 280 30.7
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.9e-23 114.0 191 40.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.5e-23 112.5 347 29.1
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 9.4e-23 111.7 324 27.8
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.6e-22 110.9 273 33.0
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.7e-22 110.2 315 31.4
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 3.6e-22 109.8 321 27.4
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.7e-22 109.4 274 31.8
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 8.0e-22 108.6 306 29.1
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 8.0e-22 108.6 306 29.1
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.0e-21 106.7 288 31.6
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 3.0e-21 106.7 191 36.1
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 6.8e-21 105.5 330 28.2
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 8.8e-21 105.1 266 32.0
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-20 104.8 215 35.8
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.2e-20 104.8 272 27.9
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 2.6e-20 103.6 154 37.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.7e-19 100.9 304 28.0
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 2.8e-19 100.1 162 38.9
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 3.1e-18 96.7 275 29.1
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.0e-18 95.5 282 29.4
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 7.0e-18 95.5 270 29.3
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.0e-16 91.7 271 27.3
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 3.8e-16 89.7 271 27.3
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 4.2e-15 86.3 272 29.4
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.0e-13 80.1 365 24.4
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 4.4e-12 76.3 91 50.5
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.7e-12 75.9 73 41.1
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.5e-12 75.5 79 48.1
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 9.8e-12 75.1 79 45.6
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-11 74.3 83 44.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.2e-11 73.9 73 47.9
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.3e-11 72.0 83 39.8
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.8e-10 70.9 285 26.3
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-10 70.5 85 41.2
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-09 67.0 89 40.4
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.3e-08 63.9 85 37.6
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 5.0e-08 62.8 75 41.3
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 5.6e-07 59.3 81 33.3
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 2.8e-06 57.0 72 40.3
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 4.7e-06 56.2 140 30.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 4.7e-06 56.2 272 23.5


User provided reference genes

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