Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 8.6e-134 480.3 243 100.0
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 3.6e-39 166.0 248 39.1
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 4.0e-38 162.5 195 43.6
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 5.0e-33 145.6 275 34.5
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 2.9e-25 119.8 228 32.0
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 2.5e-24 116.7 223 32.3
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 4.2e-24 115.9 248 29.8
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 7.2e-24 115.2 253 30.4
HanXRQChr06g0182401 Helianthus annuus HOM05D008517 ORTHO05D010482 1.6e-23 114.0 210 33.3
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 2.1e-23 113.6 231 32.5
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 4.7e-23 112.5 250 32.0
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 1.2e-21 107.8 244 29.9
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 2.6e-21 106.7 245 30.2
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 7.5e-21 105.1 250 28.4
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 9.8e-21 104.8 248 29.4
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 1.3e-20 104.4 233 29.6
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 4.9e-20 102.4 250 29.2
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 6.3e-20 102.1 250 29.6
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 8.3e-20 101.7 212 30.7
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 1.4e-19 100.9 209 30.1
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 1.8e-19 100.5 187 30.5
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 4.1e-19 99.4 200 30.5
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 1.6e-18 97.4 187 29.9
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 2.0e-18 97.1 188 29.8
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 2.0e-18 97.1 200 31.0
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 3.5e-18 96.3 245 29.0
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 4.5e-18 95.9 243 29.2
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 4.5e-18 95.9 243 29.2
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 4.5e-18 95.9 243 29.2
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 4.5e-18 95.9 243 29.2
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 4.5e-18 95.9 243 29.2
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 4.5e-18 95.9 165 32.7
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 3.9e-17 92.8 212 28.8
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 5.0e-17 92.4 246 28.0
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 6.6e-17 92.0 196 29.1
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 8.6e-17 91.7 213 28.6
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 8.6e-17 91.7 213 28.6
Prupe.6G039500 Prunus persica HOM05D016692 ORTHO05D010482 1.1e-16 91.3 234 27.4
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 1.1e-16 91.3 177 32.2
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 1.5e-16 90.9 246 28.9
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 2.5e-16 90.1 212 28.3
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 2.5e-16 90.1 212 28.3
RcHm_v2.0_Chr5g0073561 Rosa chinensis HOM05D016692 ORTHO05D010482 2.1e-15 87.0 187 29.4
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 3.6e-15 86.3 247 27.1
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 6.1e-15 85.5 245 28.6
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.0e-14 84.7 245 28.2
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 1.4e-14 84.3 245 28.2
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 5.2e-14 82.4 161 28.6
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 1.5e-13 80.9 245 28.2
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 2.0e-13 80.5 206 26.2
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 7.5e-13 78.6 235 28.5
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 9.8e-13 78.2 234 28.2
Lsat_1_v5_gn_8_99661 Lactuca sativa HOM05D008517 ORTHO05D010482 1.7e-12 77.4 189 30.2
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.2e-12 77.0 254 23.2
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.4e-11 73.6 169 24.9
PSO170G1620 Papaver somniferum HOM05D008517 ORTHO05D010482 2.4e-11 73.6 307 24.4
SGA_v2.0_scaffold77G25347 Striga asiatica HOM05D000070 ORTHO05D003837 4.1e-11 72.8 158 31.6
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 5.4e-11 72.4 186 26.3
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.5e-08 64.3 202 23.8
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 4.3e-08 62.8 166 27.1
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 5.6e-08 62.4 247 27.1
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 2.8e-07 60.1 163 24.5
CANSAT54G1933 Cannabis sativa HOM05D008517 ORTHO05D010482 4.7e-07 59.3 234 26.9
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 6.2e-07 58.9 167 25.1
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 6.2e-07 58.9 93 30.1
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 8.0e-07 58.5 167 24.6
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 1.4e-06 57.8 181 26.0
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.1e-06 56.6 161 24.2
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 4.0e-06 56.2 166 24.7
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 5.2e-06 55.8 175 24.0
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.8e-06 55.5 255 21.6


User provided reference genes

Program Settings