Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.5e-37 159.1 83 100.0
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.5e-37 159.1 83 100.0
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.3e-36 156.0 83 98.8
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.3e-36 156.0 83 98.8
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 2.8e-36 154.8 83 97.6
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 1.0e-22 109.8 68 82.4
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 1.8e-22 109.0 67 85.1
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 4.0e-22 107.8 67 83.6
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 4.0e-22 107.8 63 84.1
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 6.7e-22 107.1 67 83.6
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 6.7e-22 107.1 74 75.7
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.1e-21 106.3 60 90.0
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-21 106.3 67 77.6
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-21 106.3 60 90.0
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-21 106.3 60 90.0
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 1.5e-21 105.9 69 79.7
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 1.5e-21 105.9 60 88.3
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 4.4e-21 104.4 67 80.6
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 4.4e-21 104.4 75 73.3
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 4.4e-21 104.4 60 86.7
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 7.5e-21 103.6 60 88.3
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 7.5e-21 103.6 60 85.0
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 9.7e-21 103.2 67 79.1
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 9.7e-21 103.2 67 79.1
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 1.3e-20 102.8 60 86.7
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 1.3e-20 102.8 67 79.1
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 1.7e-20 102.4 66 77.3
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.7e-20 102.4 60 85.0
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 2.2e-20 102.1 67 80.6
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 2.2e-20 102.1 60 83.3
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.2e-20 102.1 60 86.7
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.2e-20 102.1 60 86.7
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 2.8e-20 101.7 66 78.8
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 2.8e-20 101.7 67 77.6
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 4.8e-20 100.9 66 77.3
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 4.8e-20 100.9 59 86.4
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 4.8e-20 100.9 60 83.3
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 4.8e-20 100.9 60 83.3
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 4.8e-20 100.9 60 83.3
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 6.3e-20 100.5 60 83.3
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 6.3e-20 100.5 66 77.3
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 6.3e-20 100.5 66 77.3
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 6.3e-20 100.5 60 85.0
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 8.2e-20 100.1 59 84.7
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 1.1e-19 99.8 58 86.2
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 1.4e-19 99.4 60 83.3
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 1.4e-19 99.4 66 75.8
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 1.4e-19 99.4 67 74.6
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 1.4e-19 99.4 67 74.6
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 1.8e-19 99.0 67 73.1
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 1.8e-19 99.0 68 73.5
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 1.8e-19 99.0 60 83.3
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 4.1e-19 97.8 60 83.3
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 4.1e-19 97.8 66 77.3
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 4.1e-19 97.8 61 78.7
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 80.0
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 81.7
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 5.3e-19 97.4 67 76.1
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 7.0e-19 97.1 60 78.3
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 9.1e-19 96.7 59 81.4
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 9.1e-19 96.7 60 83.3
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 9.1e-19 96.7 66 72.7
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 80.0
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 80.0
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 78.3
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 1.6e-18 95.9 59 83.1
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 2.0e-18 95.5 67 74.6
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 2.0e-18 95.5 60 80.0
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 2.0e-18 95.5 60 76.7
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.7e-18 95.1 60 81.7
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 3.5e-18 94.7 60 80.0
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 4.5e-18 94.4 60 78.3
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 7.7e-18 93.6 59 78.0
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 3.8e-17 91.3 60 76.7
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 5.0e-17 90.9 52 86.5
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 5.0e-17 90.9 62 74.2
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 6.5e-17 90.5 60 76.7
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 6.5e-17 90.5 60 76.7
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 6.5e-17 90.5 69 71.0
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 8.5e-17 90.1 60 76.7
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 1.1e-16 89.7 68 66.2
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.1e-16 89.7 64 68.8
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 1.5e-16 89.4 67 64.2
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 1.5e-16 89.4 67 64.2
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 2.5e-16 88.6 68 61.8
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 2.5e-16 88.6 56 80.4
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.5e-16 88.6 56 80.4
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 64.2
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 65.7
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 65.7
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 62.7
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 62.7
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 3.2e-16 88.2 67 65.7
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 3.2e-16 88.2 62 71.0
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 4.2e-16 87.8 67 64.2
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 4.2e-16 87.8 67 64.2
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 5.5e-16 87.4 67 62.7
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 5.5e-16 87.4 62 71.0
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 7.2e-16 87.0 59 71.2
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 7.2e-16 87.0 59 74.6
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 7.2e-16 87.0 60 70.0
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 9.4e-16 86.7 59 71.2
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 9.4e-16 86.7 59 71.2
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 9.4e-16 86.7 67 62.7
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 9.4e-16 86.7 67 62.7
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 9.4e-16 86.7 67 62.7
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 9.4e-16 86.7 67 62.7
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.6e-15 85.9 58 70.7
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.6e-15 85.9 67 61.2
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 2.1e-15 85.5 67 61.2
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 2.1e-15 85.5 58 75.9
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 2.7e-15 85.1 60 66.7
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 4.7e-15 84.3 59 72.9
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 6.1e-15 84.0 60 68.3
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.1e-15 84.0 58 74.1
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 8.0e-15 83.6 60 68.3
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 1.0e-14 83.2 61 65.6
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 1.0e-14 83.2 58 69.0
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.0e-14 81.6 59 66.1
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 4.0e-14 81.3 49 83.7
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 1.5e-13 79.3 59 64.4
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 2.6e-13 78.6 58 62.1
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 1.8e-11 72.4 59 62.7
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 1.8e-11 72.4 73 56.2
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 4.1e-11 71.2 66 60.6
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 7.0e-11 70.5 66 62.1
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 2.7e-10 68.6 89 50.6
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 7.7e-10 67.0 67 56.7
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 1.0e-09 66.6 65 50.8
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 3.8e-09 64.7 59 50.8
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 1.5e-08 62.8 66 45.5
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 7.2e-08 60.5 57 45.6
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 1.6e-07 59.3 66 42.4
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 2.1e-07 58.9 66 43.9
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 3.6e-07 58.2 63 44.4
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 3.6e-07 58.2 66 42.4
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.6e-07 58.2 74 41.9
Rhsim09G0026800 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.6e-07 58.2 56 48.2
RhsimUnG0195800 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.6e-07 58.2 56 48.2
TAR362G0617 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.6e-07 58.2 65 49.2
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 4.7e-07 57.8 66 40.9
MD10G1149900 Malus domestica HOM05D000045 ORTHO05D000611 4.7e-07 57.8 65 47.7
QL01p047769 Quercus lobata HOM05D000045 ORTHO05D000611 4.7e-07 57.8 60 45.0
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 6.1e-07 57.4 63 42.9
MD05G1155500 Malus domestica HOM05D000045 ORTHO05D000611 6.1e-07 57.4 65 47.7
Prupe.1G195800 Prunus persica HOM05D000045 ORTHO05D000611 8.0e-07 57.0 63 46.0
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 8.0e-07 57.0 82 45.1
Cpa.g.sc9.289 Carica papaya HOM05D000045 ORTHO05D000611 1.0e-06 56.6 63 44.4
Nn7g36622 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.0e-06 56.6 75 42.7
Prupe.8G188300 Prunus persica HOM05D000045 ORTHO05D000611 1.0e-06 56.6 65 47.7
CiPaw.01G099400 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.4e-06 56.2 63 42.9
TAR636G2452 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.4e-06 56.2 62 46.8
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 1.8e-06 55.8 61 41.0
FAN15G1153 Fragaria x ananassa HOM05D000045 ORTHO05D000611 2.3e-06 55.5 60 48.3
Lj3C186T3 Lonicera japonica HOM05D000045 ORTHO05D000611 2.3e-06 55.5 63 41.3
Potri.007G128900 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.3e-06 55.5 55 50.9
GSVIVG01001896001 Vitis vinifera HOM05D000045 ORTHO05D000611 2.3e-06 55.5 66 47.0
GSVIVG01010762001 Vitis vinifera HOM05D000045 ORTHO05D000611 2.3e-06 55.5 69 44.9
CSS0016444 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.0e-06 55.1 61 42.6
CSS0017326 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.0e-06 55.1 61 42.6
Duzib268G1506 Durio zibethinus HOM05D000045 ORTHO05D000611 3.0e-06 55.1 61 45.9
Potri.008G076800 Populus trichocarpa HOM05D000045 ORTHO05D000611 3.0e-06 55.1 57 45.6
RcHm_v2.0_Chr6g0282551 Rosa chinensis HOM05D000045 ORTHO05D000611 4.0e-06 54.7 54 51.9
FvH4_2g17601 Fragaria vesca HOM05D000045 ORTHO05D000611 5.2e-06 54.3 65 46.2
MD05G1156200 Malus domestica HOM05D000045 ORTHO05D000611 5.2e-06 54.3 65 46.2
Atru.chr4.1194 Acer truncatum HOM05D000045 ORTHO05D000611 6.8e-06 53.9 56 51.8
COL.COLO4_07043 Corchorus olitorius HOM05D000045 ORTHO05D000611 6.8e-06 53.9 66 45.5
Thecc.01G209100 Theobroma cacao HOM05D000045 ORTHO05D000611 6.8e-06 53.9 65 46.2
Duzib133G0982 Durio zibethinus HOM05D000045 ORTHO05D000611 8.8e-06 53.5 55 49.1
FvH4_6g00152 Fragaria vesca HOM05D000045 ORTHO05D000611 8.8e-06 53.5 61 39.3
Manes.04G043300 Manihot esculenta HOM05D000045 ORTHO05D000611 8.8e-06 53.5 55 50.9
Nn1g09619 Nelumbo nucifera HOM05D000045 ORTHO05D000611 8.8e-06 53.5 67 43.3


User provided reference genes

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