Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 1.2e-169 599.7 313 100.0
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 3.1e-96 355.9 272 71.0
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 5.9e-95 351.7 272 71.3
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.5e-93 347.1 272 69.1
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 9.8e-82 307.8 273 61.2
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 3.2e-80 302.8 272 62.1
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 4.1e-80 302.4 264 61.0
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 3.5e-79 299.3 234 71.4
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 7.3e-77 291.6 264 59.5
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.6e-76 290.4 264 59.5
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.7e-76 288.9 270 57.8
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 6.2e-76 288.5 264 59.1
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 8.0e-76 288.1 265 59.6
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.1e-75 287.7 257 60.7
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 5.2e-75 285.4 307 54.7
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 1.2e-71 274.2 273 55.7
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 7.8e-71 271.6 269 56.9
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 7.8e-71 271.6 302 54.3
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 7.8e-71 271.6 280 54.3
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 3.9e-70 269.2 266 56.0
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 6.6e-70 268.5 266 57.5
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 1.1e-69 267.7 265 56.2
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 3.3e-69 266.2 264 55.3
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 4.3e-69 265.8 265 54.3
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 7.3e-69 265.0 264 54.5
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 9.5e-69 264.6 264 54.9
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 1.6e-68 263.8 265 57.4
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 1.6e-68 263.8 266 54.5
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 3.6e-68 262.7 264 57.2
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 8.9e-67 258.1 266 53.0
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 1.3e-65 254.2 267 53.6
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 2.9e-65 253.1 266 54.9
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 3.7e-65 252.7 266 54.1
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 5.4e-64 248.8 300 51.3
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 1.6e-63 247.3 277 51.6
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 1.7e-62 243.8 280 52.5
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 5.1e-62 242.3 265 52.1
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 6.6e-62 241.9 264 53.4
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 2.5e-61 240.0 266 51.9
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 2.8e-60 236.5 274 51.1
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 2.6e-58 229.9 257 54.5
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 2.6e-58 229.9 258 54.3
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 4.4e-58 229.2 306 45.8
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 5.8e-58 228.8 262 52.3
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 7.6e-58 228.4 270 51.9
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 2.2e-57 226.9 269 49.8
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 2.4e-56 223.4 265 51.3
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 4.2e-56 222.6 292 49.7
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 4.2e-56 222.6 262 51.5
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 7.1e-56 221.9 292 49.7
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 3.5e-55 219.5 265 50.2
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 4.6e-55 219.2 198 62.6
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.7e-54 217.2 302 46.0
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 3.0e-54 216.5 265 49.1
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 3.0e-54 216.5 267 48.3
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 5.1e-54 215.7 305 46.9
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 8.7e-54 214.9 261 50.6
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 1.1e-53 214.5 262 50.0
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 7.3e-53 211.8 266 49.2
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 9.6e-53 211.5 309 43.4
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 2.1e-52 210.3 266 49.6
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 8.1e-52 208.4 275 46.2
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 1.1e-51 208.0 264 48.5
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 1.1e-51 208.0 280 48.6
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 4.0e-51 206.1 311 46.3
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 6.9e-51 205.3 278 45.3
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 6.9e-51 205.3 262 47.3
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 1.2e-50 204.5 276 47.1
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 5.8e-50 202.2 274 48.9
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 1.7e-49 200.7 266 49.6
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 4.9e-49 199.1 296 43.6
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 1.4e-48 197.6 290 44.8
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 2.4e-48 196.8 211 53.1
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 4.2e-48 196.1 268 47.0
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 1.2e-47 194.5 204 53.9
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 2.1e-47 193.7 264 45.5
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 6.6e-46 188.7 266 45.5
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 4.8e-44 182.6 262 45.4
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 4.8e-44 182.6 262 45.4
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 5.3e-43 179.1 269 41.6
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 4.5e-42 176.0 263 41.4
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 5.8e-42 175.6 284 40.8
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 2.1e-39 167.2 265 43.8
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 3.2e-32 143.3 137 55.5
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 1.3e-30 137.9 272 36.8
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 3.9e-30 136.3 268 36.2
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 2.5e-29 133.7 268 35.8
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 4.3e-29 132.9 263 36.1
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 3.1e-27 126.7 269 34.9
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 5.3e-27 125.9 270 34.1
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 1.3e-25 121.3 269 33.8
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 1.3e-25 121.3 269 37.2
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 3.8e-25 119.8 269 35.3
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 4.9e-25 119.4 269 33.8
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 4.9e-25 119.4 269 33.8
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 4.9e-25 119.4 269 35.3
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.1e-24 118.2 269 33.5
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 9.3e-24 115.2 270 32.6
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.7e-23 113.6 271 34.3
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.0e-22 111.7 268 32.8
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.0e-22 111.7 271 33.9
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 3.3e-21 106.7 261 31.8
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 7.4e-21 105.5 135 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 9.7e-21 105.1 133 45.1
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 2.8e-20 103.6 140 41.4
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.4e-19 101.3 265 29.8
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 9.0e-19 98.6 253 32.0
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 1.0e-17 95.1 228 31.1
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 2.2e-17 94.0 275 30.9
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 9.4e-16 88.6 278 27.7
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.3e-12 78.2 201 33.8
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 4.8e-12 76.3 67 58.2
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 1.7e-09 67.8 61 55.7
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.2e-09 67.4 133 39.8


User provided reference genes

Program Settings