Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018255 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 2.2e-64 248.8 130 100.0
CSS0025152 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 2.2e-64 248.8 130 100.0
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 4.0e-13 78.6 48 77.1
Rhsim13G0234800 Rhododendron simsii HOM05D002872 ORTHO05D003204 2.0e-12 76.3 50 68.0
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 7.6e-12 74.3 49 71.4
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 7.6e-12 74.3 49 67.3
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 1.7e-11 73.2 49 65.3
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 3.8e-11 72.0 49 65.3
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 3.8e-11 72.0 49 65.3
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 3.8e-11 72.0 66 54.5
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 6.4e-11 71.2 49 59.2
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 8.4e-11 70.9 49 57.1
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 1.1e-10 70.5 49 61.2
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 1.4e-10 70.1 49 57.1
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 1.9e-10 69.7 49 65.3
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 1.9e-10 69.7 49 65.3
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 2.4e-10 69.3 49 61.2
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 2.4e-10 69.3 49 63.3
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 9.3e-10 67.4 48 62.5
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 1.6e-09 66.6 49 59.2
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 2.1e-09 66.2 49 57.1
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 2.7e-09 65.9 49 55.1
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 3.5e-09 65.5 49 59.2
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 6.0e-09 64.7 49 57.1
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 1.0e-08 63.9 49 57.1
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 1.0e-08 63.9 49 51.0
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 2.3e-08 62.8 50 58.0
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 2.3e-08 62.8 69 49.3
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 3.9e-08 62.0 49 53.1
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 3.9e-08 62.0 49 55.1
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 6.6e-08 61.2 49 55.1
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 8.7e-08 60.8 49 53.1
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 1.1e-07 60.5 49 55.1
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 1.1e-07 60.5 59 44.1
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 1.5e-07 60.1 49 53.1
Lsat_1_v5_gn_3_74580 Lactuca sativa HOM05D002872 ORTHO05D022846 1.5e-07 60.1 87 33.3
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 2.5e-07 59.3 50 50.0
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 2.5e-07 59.3 49 55.1
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 3.3e-07 58.9 53 49.1
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 3.3e-07 58.9 49 53.1
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 3.3e-07 58.9 49 55.1
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 3.3e-07 58.9 49 51.0
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 4.3e-07 58.5 49 53.1
Haze_22913 Corylus avellana HOM05D002872 ORTHO05D003204 4.3e-07 58.5 50 56.0
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 4.3e-07 58.5 49 53.1
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 4.3e-07 58.5 49 51.0
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 5.6e-07 58.2 49 51.0
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 5.6e-07 58.2 49 51.0
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 5.6e-07 58.2 49 57.1
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 5.6e-07 58.2 49 49.0
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 5.6e-07 58.2 49 46.9
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 7.3e-07 57.8 49 51.0
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 7.3e-07 57.8 49 51.0
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 7.3e-07 57.8 49 51.0
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 9.6e-07 57.4 49 51.0
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 9.6e-07 57.4 49 46.9
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 9.6e-07 57.4 49 51.0
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 9.6e-07 57.4 49 51.0
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 9.6e-07 57.4 50 46.0
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 2.1e-06 56.2 49 49.0
C07p28280 Brassica napus HOM05D002872 ORTHO05D003204 2.8e-06 55.8 49 49.0
BolC7t43369H Brassica oleracea HOM05D002872 ORTHO05D003204 2.8e-06 55.8 49 49.0
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 4.8e-06 55.1 49 46.9
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 4.8e-06 55.1 49 46.9
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 6.2e-06 54.7 48 50.0
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 6.2e-06 54.7 49 49.0
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 8.1e-06 54.3 49 46.9
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 8.1e-06 54.3 49 46.9


User provided reference genes

Program Settings