Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.9e-60 235.7 125 100.0
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 2.5e-28 129.0 84 86.9
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 1.4e-26 123.2 86 76.7
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 6.8e-26 120.9 86 77.9
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 8.9e-26 120.6 86 70.9
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 8.9e-26 120.6 80 80.0
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 1.2e-25 120.2 86 70.9
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 1.2e-25 120.2 88 76.1
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 1.5e-25 119.8 86 75.6
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 1.5e-25 119.8 84 76.2
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 1.5e-25 119.8 89 71.9
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 1.5e-25 119.8 86 73.3
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 1.5e-25 119.8 86 73.3
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 1.5e-25 119.8 86 72.1
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 1.5e-25 119.8 86 72.1
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 2.0e-25 119.4 86 76.7
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.0e-25 119.4 86 75.6
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 4.4e-25 118.2 80 75.0
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 7.5e-25 117.5 87 75.9
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 7.5e-25 117.5 86 70.9
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 7.5e-25 117.5 86 75.6
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 9.8e-25 117.1 86 74.4
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 1.7e-24 116.3 86 75.6
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 1.7e-24 116.3 80 85.0
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 2.2e-24 115.9 66 86.4
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 2.9e-24 115.5 88 77.3
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 2.9e-24 115.5 105 63.8
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.9e-24 115.5 87 71.3
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 2.9e-24 115.5 86 74.4
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 2.9e-24 115.5 80 77.5
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 2.9e-24 115.5 89 69.7
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.7e-24 115.2 84 73.8
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 3.7e-24 115.2 87 74.7
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 3.7e-24 115.2 80 76.2
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 4.9e-24 114.8 87 74.7
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 8.3e-24 114.0 80 73.8
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 8.3e-24 114.0 80 73.8
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 8.3e-24 114.0 86 67.4
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 1.4e-23 113.2 87 70.1
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 1.9e-23 112.8 86 76.7
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 2.4e-23 112.5 92 65.2
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 3.2e-23 112.1 86 72.1
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 5.4e-23 111.3 87 77.0
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 5.4e-23 111.3 87 67.8
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 5.4e-23 111.3 86 75.6
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 9.2e-23 110.5 87 73.6
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 1.2e-22 110.2 65 83.1
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 2.0e-22 109.4 80 73.8
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 2.7e-22 109.0 95 65.3
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 2.7e-22 109.0 87 67.8
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 2.7e-22 109.0 87 69.0
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 3.5e-22 108.6 92 70.7
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 4.6e-22 108.2 86 69.8
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 4.6e-22 108.2 81 79.0
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 4.6e-22 108.2 86 66.3
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 7.8e-22 107.5 89 70.8
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 7.8e-22 107.5 89 70.8
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 1.0e-21 107.1 86 75.6
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 1.0e-21 107.1 63 82.5
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.0e-21 107.1 80 80.0
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 1.0e-21 107.1 86 75.6
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 2.3e-21 105.9 63 82.5
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 3.9e-21 105.1 88 73.9
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 6.6e-21 104.4 62 80.6
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 8.6e-21 104.0 67 77.6
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 1.5e-20 103.2 86 64.0
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.6e-19 99.8 86 67.4
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 1.6e-19 99.8 86 68.6
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 2.8e-19 99.0 88 68.2
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 2.8e-19 99.0 62 77.4
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 2.8e-19 99.0 58 81.0
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 4.7e-19 98.2 62 79.0
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 4.7e-19 98.2 86 69.8
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 4.7e-19 98.2 86 69.8
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 8.0e-19 97.4 62 80.6
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 8.0e-19 97.4 64 78.1
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 8.0e-19 97.4 87 72.4
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 1.4e-18 96.7 86 68.6
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 1.4e-18 96.7 63 76.2
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 4.0e-18 95.1 95 54.7
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 6.8e-18 94.4 87 65.5
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 6.8e-18 94.4 86 65.1
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 8.9e-18 94.0 90 66.7
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 1.5e-17 93.2 86 67.4
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 2.0e-17 92.8 63 71.4
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 2.6e-17 92.4 82 72.0
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 4.4e-17 91.7 87 62.1
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 5.8e-17 91.3 94 64.9
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 1.7e-16 89.7 87 59.8
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 3.7e-16 88.6 92 65.2
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 4.9e-16 88.2 90 65.6
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 6.4e-16 87.8 91 64.8
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 8.3e-16 87.4 58 72.4
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 1.4e-15 86.7 87 58.6
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.9e-15 86.3 86 59.3
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 2.4e-15 85.9 84 67.9
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 2.4e-15 85.9 84 67.9
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 1.2e-14 83.6 78 66.7
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 2.1e-14 82.8 64 67.2
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 2.1e-14 82.8 64 60.9
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 2.1e-14 82.8 66 62.1
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 1.0e-13 80.5 60 66.7
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 1.3e-13 80.1 86 64.0
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 2.3e-13 79.3 63 63.5
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 3.0e-13 79.0 64 67.2
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 3.9e-13 78.6 61 65.6
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 5.1e-13 78.2 69 65.2
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 8.6e-13 77.4 101 51.5
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 4.3e-12 75.1 86 53.5
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 4.0e-10 68.6 63 58.7
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 1.2e-09 67.0 49 77.6
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.2e-06 57.0 49 77.6
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 3.5e-06 55.5 86 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 7.8e-06 54.3 59 47.5
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 7.8e-06 54.3 86 41.9


User provided reference genes

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