Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1669.1 848 100.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1355.5 887 80.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 886 80.4
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1350.1 887 79.7
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1349.0 885 79.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1347.0 882 80.0
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1345.1 884 79.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1343.2 885 79.5
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1338.9 886 79.6
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1336.6 886 79.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1336.2 884 79.4
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1332.8 881 78.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1332.4 886 79.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1332.0 884 79.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1332.0 884 78.8
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1329.7 886 78.6
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1329.3 885 78.2
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1327.8 886 78.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1325.8 886 78.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1325.1 886 78.7
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1321.2 886 78.7
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1320.8 885 77.6
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1320.8 897 77.6
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1318.5 886 77.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1317.0 902 76.9
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1317.0 893 77.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 886 77.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1315.4 908 75.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1315.1 888 77.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1314.7 881 78.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1314.7 886 77.9
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1311.2 879 76.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1310.0 886 77.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1308.5 881 77.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 916 76.0
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 885 76.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1307.0 887 77.1
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1305.4 886 77.3
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1305.0 881 76.8
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1303.5 886 77.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1300.0 884 76.5
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1299.3 886 77.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1298.1 883 76.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1297.0 889 77.2
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1295.8 887 76.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1295.4 886 76.4
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1295.4 887 77.3
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1294.3 884 76.5
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1293.5 884 75.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1293.5 882 76.1
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1292.3 884 75.9
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1290.0 886 75.3
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1290.0 884 76.6
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1289.6 893 75.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1289.6 893 75.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1287.3 893 75.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1286.9 882 75.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1286.2 887 75.6
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1285.0 884 76.1
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1284.2 882 75.9
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1282.7 882 75.7
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1282.3 882 75.6
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1280.4 874 77.1
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1280.4 893 74.7
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1279.2 884 75.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1278.5 886 75.2
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1277.3 882 75.1
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1276.9 888 74.7
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1276.9 851 77.9
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1275.8 884 75.1
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1275.8 883 75.4
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1275.4 886 75.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1274.6 882 75.1
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1274.6 882 75.1
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1274.6 882 74.8
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1271.9 882 74.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1271.9 882 75.2
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1271.1 869 76.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1270.8 882 74.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1270.8 882 74.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1270.4 883 75.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1270.0 886 75.2
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 882 74.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 882 74.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 882 74.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 889 75.9
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 884 76.0
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1268.1 813 83.1
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1266.1 889 74.4
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1265.8 886 74.2
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1264.2 885 74.7
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1263.4 865 76.9
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1262.7 851 76.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1262.3 884 73.6
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1261.5 870 75.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1260.4 872 74.8
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1258.8 869 75.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1258.4 884 73.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1252.7 903 73.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1251.5 845 78.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1250.7 931 72.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1248.8 868 75.7
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1248.4 885 74.1
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1246.9 865 75.7
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1237.6 866 74.2
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1234.9 887 72.6
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1233.4 883 72.8
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1229.2 909 71.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1219.5 856 73.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1217.6 888 74.1
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1212.2 894 72.8
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1209.1 980 68.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1203.7 868 73.7
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1203.3 784 79.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1197.6 884 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1196.0 885 70.3
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1194.5 883 69.8
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1193.3 886 72.3
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1193.3 866 71.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1189.5 875 73.1
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1187.2 883 69.1
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1166.0 885 70.5
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1160.6 834 71.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1152.5 815 73.1
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1135.6 909 67.7
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1128.2 880 69.7
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1102.0 887 68.7
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1088.2 787 71.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1083.6 734 74.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 3.6e-304 1048.1 728 75.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.8e-296 1021.9 885 60.7
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 6.2e-296 1020.8 636 79.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 2.6e-294 1015.4 868 61.6
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 4.7e-288 994.6 884 62.0
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.6e-270 935.6 582 79.9
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 6.2e-256 887.9 895 53.3
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.2e-221 773.1 915 48.4
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.3e-208 730.7 554 69.7
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-189 667.2 505 71.3
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-174 617.8 458 72.9
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.3e-172 609.4 434 75.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.4e-169 599.7 456 70.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 3.1e-154 550.1 339 81.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 4.9e-152 542.7 736 45.5
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.6e-147 526.6 408 69.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 4.8e-147 526.2 554 55.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.8e-131 473.8 297 79.5
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.4e-114 417.5 396 58.6
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.1e-90 337.0 428 48.1
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.5e-87 326.6 297 62.3
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 3.7e-83 313.9 259 64.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.1e-82 310.8 235 69.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-60 238.0 232 59.9
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 6.6e-56 223.4 221 57.0
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.4e-45 189.1 119 76.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 8.7e-40 169.9 257 43.6
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 5.6e-39 167.2 158 62.0
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 8.1e-30 136.7 83 81.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 8.1e-30 136.7 91 70.3
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 9.3e-26 123.2 132 53.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 9.6e-23 113.2 94 66.0
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-20 106.3 87 66.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.3e-19 102.8 448 26.6
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.7e-17 95.1 54 74.1
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.5e-15 88.6 60 68.3
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 3.7e-14 84.7 85 61.2
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-12 77.0 52 71.2
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-11 75.1 46 78.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.4e-10 72.8 57 64.9
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.4e-10 72.8 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 5.5e-10 70.9 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.2e-09 69.7 74 52.7
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.0e-08 65.1 83 49.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 5.1e-08 64.3 134 38.1
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.5e-07 62.8 43 69.8


User provided reference genes

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