Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.3e-248 860.1 443 100.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.4e-243 845.9 447 98.0
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.2e-212 742.3 443 85.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.3e-196 689.9 443 79.7
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.9e-192 676.0 444 76.1
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 2.1e-191 672.5 447 77.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.2e-189 666.8 398 85.4
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.5e-189 666.4 463 74.5
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.9e-188 662.1 459 75.2
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.8e-188 661.8 446 76.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.2e-187 658.7 446 77.1
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.1e-186 656.0 444 76.6
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 7.9e-186 654.1 444 73.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.0e-185 653.7 444 73.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.8e-185 652.9 444 73.6
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.2e-183 646.0 416 80.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.2e-183 646.0 445 74.6
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.9e-182 641.0 448 73.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.4e-181 638.6 444 73.4
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.7e-180 636.3 447 73.4
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 6.5e-180 634.4 462 70.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.1e-179 633.6 443 74.0
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.5e-179 632.5 447 71.1
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.4e-177 626.7 455 72.1
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.8e-177 626.3 461 69.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-177 626.3 418 75.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.0e-176 622.9 445 72.6
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.7e-175 619.8 448 71.7
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.7e-175 618.6 449 73.7
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 4.1e-174 615.1 444 72.5
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.0e-173 612.8 448 70.8
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.6e-173 612.5 450 70.0
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 7.7e-173 610.9 446 70.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.8e-172 608.6 442 72.9
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.2e-170 603.6 430 73.5
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.1e-170 601.3 427 73.8
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.0e-169 600.5 424 74.3
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.8e-169 599.7 403 75.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.1e-168 597.0 424 73.1
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.5e-168 596.7 417 70.5
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.0e-168 596.3 446 70.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 4.4e-168 595.1 447 70.7
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.2e-167 592.8 442 68.1
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 4.8e-167 591.7 422 71.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.2e-167 590.9 426 73.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.4e-166 589.3 426 73.0
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.5e-165 585.1 428 72.2
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 7.7e-165 584.3 366 80.1
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.2e-164 582.8 446 68.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.2e-163 578.6 413 70.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.2e-163 578.6 443 68.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.6e-162 576.6 447 68.2
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.0e-161 572.4 433 69.1
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.6e-160 569.3 388 73.7
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 5.7e-160 568.2 443 67.3
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 7.4e-160 567.8 416 69.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 9.7e-160 567.4 444 66.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.7e-159 565.5 330 85.8
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 5.3e-158 561.6 443 66.6
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.6e-157 560.1 421 70.5
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 5.9e-157 558.1 420 68.1
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 7.7e-157 557.8 449 64.8
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.3e-156 557.0 421 68.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.2e-156 556.2 452 66.8
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.5e-155 553.5 475 60.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.9e-155 553.1 475 63.4
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.0e-153 547.4 452 64.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.8e-153 546.6 504 60.1
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.0e-153 545.8 451 63.0
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 3.0e-153 545.8 472 63.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.2e-152 543.9 445 64.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 4.4e-152 542.0 493 63.1
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.1e-150 537.3 450 62.7
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.1e-150 537.3 386 72.5
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.8e-150 536.6 407 69.0
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.1e-150 535.4 471 62.0
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.7e-149 532.7 453 62.3
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.0e-148 530.8 452 62.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-148 530.4 474 61.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.1e-147 527.3 356 74.4
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.1e-147 527.3 455 60.4
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.5e-147 526.9 354 74.0
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.9e-147 526.6 377 74.0
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 5.5e-147 525.0 422 65.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 7.2e-147 524.6 380 71.6
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 9.4e-147 524.2 445 63.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-146 523.1 453 61.4
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-146 522.7 447 62.4
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.7e-146 522.7 427 64.6
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 8.0e-146 521.2 453 61.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-145 520.4 447 63.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.8e-145 520.0 485 61.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.3e-145 519.6 410 65.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.0e-145 519.2 424 64.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-145 519.2 443 62.8
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.0e-145 519.2 510 58.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.0e-145 518.8 450 63.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 4.0e-145 518.8 355 73.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 4.4e-144 515.4 399 66.4
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.8e-143 511.9 445 62.0
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 5.4e-142 508.4 443 60.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.2e-141 507.3 425 64.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.2e-141 507.3 367 71.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.0e-141 506.5 460 61.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 3.8e-140 502.3 402 66.7
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-139 500.7 421 61.8
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.5e-139 498.4 469 58.2
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-138 496.9 396 65.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-137 494.2 435 60.2
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 5.2e-137 491.9 426 61.0
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.3e-135 487.3 331 73.4
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.3e-132 477.2 449 57.5
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 5.6e-131 471.9 317 73.2
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.8e-130 469.5 444 56.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 6.1e-130 468.4 409 59.9
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.8e-129 466.8 444 56.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.9e-127 458.8 449 57.9
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 8.3e-127 458.0 409 58.9
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.0e-125 453.4 379 60.7
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 7.8e-125 451.4 458 53.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.6e-123 445.3 432 54.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.6e-122 442.6 391 62.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.0e-120 436.8 264 79.2
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.6e-120 436.4 455 54.7
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.4e-120 436.0 301 75.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.3e-119 434.1 448 52.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.2e-119 433.3 314 71.0
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.6e-117 427.2 355 61.1
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.3e-116 423.3 426 53.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-116 422.9 419 53.7
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.9e-115 420.2 408 56.4
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 1.4e-110 404.1 329 60.2
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 7.6e-104 381.7 346 57.5
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 3.9e-100 369.4 456 46.7
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-98 362.8 406 51.5
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-97 359.8 405 51.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.1e-97 359.8 287 64.8
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 6.9e-97 358.6 404 51.2
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.5e-96 357.5 370 50.8
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.3e-95 354.4 268 70.5
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 6.4e-95 352.1 441 46.7
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-94 351.3 406 50.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 5.1e-92 342.4 345 51.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 8.1e-90 335.1 430 48.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 3.8e-87 326.2 365 50.7
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 4.9e-87 325.9 365 50.7
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 8.7e-84 315.1 208 76.4
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 7.4e-83 312.0 350 51.4
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 6.2e-82 308.9 354 50.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.8e-76 290.8 377 46.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.4e-72 276.6 449 41.9
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 8.4e-71 271.9 448 41.3
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.1e-60 236.1 494 35.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.6e-51 207.2 153 67.3
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.2e-50 202.2 144 68.1
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-45 188.3 191 50.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 9.7e-43 178.7 141 67.4
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.4e-35 153.3 94 75.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.8e-34 150.6 166 50.0
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-32 144.8 146 58.9
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-30 138.3 133 57.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.5e-30 138.3 147 50.3
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.7e-29 133.3 84 81.0
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 9.8e-27 125.6 201 40.8
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 6.3e-26 122.9 119 51.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 7.0e-25 119.4 99 56.6
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-23 112.5 94 57.4
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.5e-22 111.7 64 84.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 4.3e-22 110.2 101 54.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.6e-22 109.8 94 57.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.1e-21 107.8 73 79.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.4e-17 95.1 135 44.4
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 2.4e-17 94.4 96 57.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-16 91.7 304 28.9
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.1e-14 85.5 196 32.7
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 8.0e-13 79.3 84 58.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.0e-12 79.0 96 41.7
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-12 78.6 84 58.3
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 3.4e-11 73.9 62 61.3
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 5.8e-11 73.2 49 67.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.9e-10 70.9 54 53.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-10 70.9 54 53.7
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 4.9e-10 70.1 190 34.2
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.4e-10 69.7 190 32.6
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 6.0e-08 63.2 39 74.4
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 2.3e-07 61.2 89 37.1
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 1.9e-06 58.2 42 69.0


User provided reference genes

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