Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.1e-175 617.8 357 100.0
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 6.1e-112 408.3 374 67.1
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.5e-110 403.7 387 66.7
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.4e-108 396.4 387 65.1
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.0e-103 380.9 372 63.4
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.3e-101 374.0 388 67.3
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.7e-96 355.5 407 60.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.0e-95 352.8 381 59.3
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 6.8e-95 351.7 378 61.4
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.8e-92 343.6 381 65.9
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.1e-92 342.4 377 62.3
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.0e-92 341.7 380 57.4
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.3e-90 337.4 385 62.1
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.9e-89 333.6 374 61.2
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.2e-89 331.6 383 61.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.1e-88 330.1 381 62.5
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.0e-87 325.9 371 62.0
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.0e-86 323.6 459 52.9
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 2.6e-86 323.2 372 59.7
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 5.7e-86 322.0 381 63.3
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 7.5e-86 321.6 370 57.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.7e-85 320.5 368 60.9
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.4e-84 315.5 383 56.7
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 7.0e-84 315.1 391 59.8
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 4.5e-83 312.4 373 58.2
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.5e-83 312.4 371 59.8
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.9e-83 312.0 386 57.8
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.9e-81 307.0 371 58.2
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.3e-81 305.8 376 63.0
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 5.6e-81 305.4 373 58.7
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 5.6e-81 305.4 379 59.9
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 9.5e-81 304.7 383 54.8
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.2e-80 304.3 375 62.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.1e-80 303.5 385 54.5
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 6.1e-80 302.0 382 58.9
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 6.1e-80 302.0 381 55.4
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 6.1e-80 302.0 379 57.3
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 6.1e-80 302.0 378 56.6
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.0e-79 301.2 284 67.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.0e-79 299.3 366 54.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 8.9e-79 298.1 391 58.6
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 3.4e-78 296.2 368 54.6
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 3.7e-77 292.7 386 54.4
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 6.4e-77 292.0 378 57.9
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-76 291.2 369 59.6
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.4e-76 290.8 385 53.5
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.6e-75 285.8 391 56.5
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 5.9e-75 285.4 381 53.0
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.7e-74 283.9 389 53.5
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 8.6e-74 281.6 373 50.7
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.5e-73 280.0 384 55.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.5e-73 280.0 393 55.5
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.5e-73 280.0 371 51.8
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.6e-72 277.3 399 55.4
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.8e-72 276.6 378 54.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 3.6e-72 276.2 388 55.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.6e-72 276.2 390 54.9
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.8e-71 271.9 379 55.7
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.2e-70 271.2 388 54.4
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.0e-70 270.4 352 54.0
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.0e-70 270.4 366 56.8
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 9.8e-70 268.1 367 54.2
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.7e-69 267.3 371 49.1
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.4e-68 264.2 371 53.4
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.0e-67 260.4 368 58.7
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 6.0e-67 258.8 384 51.3
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 6.0e-67 258.8 361 54.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.7e-66 257.3 376 57.2
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-65 254.6 347 50.4
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.5e-65 253.4 378 53.2
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 9.5e-65 251.5 374 48.1
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.2e-64 251.1 380 55.5
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.2e-64 251.1 378 50.3
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.6e-64 250.8 345 50.4
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 2.8e-64 250.0 373 47.5
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.6e-64 249.6 365 52.1
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.7e-64 249.2 375 47.2
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-63 248.1 353 56.9
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.4e-63 247.7 381 52.8
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 5.2e-63 245.7 379 53.8
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 6.8e-63 245.4 362 50.6
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-62 244.6 327 56.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.4e-62 243.0 366 54.4
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 9.9e-62 241.5 374 49.5
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-61 241.1 373 48.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.3e-61 241.1 374 46.0
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 3.7e-61 239.6 346 53.2
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.7e-61 239.6 345 55.9
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 4.9e-61 239.2 264 58.7
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-59 234.2 373 47.7
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.6e-59 232.6 369 53.1
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-58 230.7 377 53.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.3e-58 230.3 374 47.9
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.0e-58 229.9 375 54.1
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.0e-58 229.9 370 53.0
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.6e-58 228.8 380 52.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 8.6e-58 228.4 363 46.6
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.5e-57 227.6 375 53.1
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.3e-57 226.1 393 50.6
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 9.5e-57 224.9 363 51.2
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.2e-56 224.6 362 51.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.1e-56 223.8 365 51.2
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 4.7e-56 222.6 364 47.5
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.7e-56 222.6 366 46.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.7e-56 222.6 379 52.2
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.3e-55 220.3 367 43.1
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 6.8e-55 218.8 365 50.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.6e-54 215.3 372 45.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.4e-53 212.2 366 51.1
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.4e-52 210.3 369 44.2
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-51 207.2 443 40.4
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-51 206.8 447 40.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 4.6e-51 206.1 371 41.2
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.9e-50 203.0 319 48.3
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 8.6e-50 201.8 339 46.3
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.5e-49 201.1 338 48.8
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-49 200.7 321 47.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-48 198.0 384 40.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.8e-47 194.1 190 64.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.4e-47 193.7 350 45.4
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 9.0e-47 191.8 368 42.7
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.2e-46 191.4 331 42.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 9.9e-46 188.3 376 44.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.4e-45 185.3 377 40.8
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.3e-42 177.9 339 40.4
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.3e-42 177.9 330 51.8
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.3e-42 177.9 330 51.8
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 3.9e-42 176.4 375 44.0
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.5e-41 174.5 342 42.4
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.9e-41 174.1 340 39.7
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 7.3e-41 172.2 367 42.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 4.8e-40 169.5 372 38.4
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.1e-39 166.8 371 38.8
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.3e-39 166.0 231 51.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.9e-39 165.6 343 38.8
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.9e-39 165.6 343 38.8
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.2e-38 164.9 306 40.5
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.5e-38 164.5 365 44.9
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 8.4e-37 158.7 368 38.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.2e-36 156.8 330 38.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.1e-35 154.1 346 38.2
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.3e-34 150.6 355 36.1
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.5e-33 147.9 261 44.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.5e-33 147.1 353 44.2
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.3e-33 146.7 266 48.9
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 1.6e-32 144.4 265 43.4
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.1e-32 144.1 387 38.8
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.1e-31 141.7 382 41.6
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.4e-31 141.4 346 41.6
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 9.0e-31 138.7 394 37.1
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.6e-30 137.1 216 52.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.9e-30 135.2 319 39.2
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.1e-28 131.7 137 69.3
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.3e-26 124.8 288 37.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.8e-26 124.4 217 43.8
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 6.7e-26 122.5 353 38.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.1e-25 121.7 286 37.8
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.6e-25 119.4 328 36.6
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.6e-24 117.9 225 45.3
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-24 117.9 225 45.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.6e-24 117.9 286 37.1
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 4.8e-24 116.3 216 44.9
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 6.2e-24 115.9 215 43.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 6.2e-24 115.9 215 43.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.4e-23 114.8 222 44.6
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-22 111.7 344 36.9
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.5e-22 111.3 226 42.9
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.5e-22 111.3 141 56.7
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.7e-18 95.9 217 41.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.7e-18 95.9 307 29.6
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.2e-16 90.9 253 32.4
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.5e-09 67.4 61 57.4
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.7e-09 66.2 114 50.9
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 9.7e-09 65.5 67 50.7
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.8e-08 63.9 58 62.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.3e-08 62.8 58 60.3
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.2e-08 62.4 107 43.0
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 5.9e-06 56.2 322 27.3


User provided reference genes

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