Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 2.3e-119 432.2 205 100.0
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 6.8e-108 394.0 205 87.8
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 6.4e-106 387.5 203 87.7
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 8.3e-106 387.1 203 87.2
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 4.7e-101 371.3 203 82.8
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 2.6e-99 365.5 204 82.4
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 4.9e-98 361.3 204 80.4
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.4e-97 359.8 203 80.8
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 4.1e-97 358.2 205 81.0
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 9.2e-97 357.1 204 77.9
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 4.6e-96 354.8 204 77.5
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 7.8e-96 354.0 204 77.5
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.7e-95 352.8 204 78.4
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 2.3e-95 352.4 204 79.4
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 3.0e-95 352.1 204 77.5
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 1.6e-93 346.3 204 76.5
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 3.6e-93 345.1 205 76.6
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 3.6e-93 345.1 204 77.5
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.2e-93 344.4 204 76.0
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.2e-93 344.4 204 76.0
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.1e-92 343.6 204 76.0
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 2.4e-92 342.4 204 76.0
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 4.0e-92 341.7 204 74.0
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 6.9e-92 340.9 205 78.5
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 8.9e-92 340.5 204 76.0
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.2e-91 340.1 205 77.1
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.2e-91 340.1 203 75.9
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.4e-91 338.6 204 75.0
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 5.8e-91 337.8 204 72.5
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 9.9e-91 337.0 203 74.4
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 4.9e-90 334.7 205 77.1
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 4.9e-90 334.7 205 77.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 8.4e-90 334.0 203 74.9
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 8.4e-90 334.0 204 73.5
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.9e-89 332.8 204 73.0
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 2.4e-89 332.4 203 75.4
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 4.2e-89 331.6 203 72.9
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 2.7e-88 328.9 184 82.6
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 4.6e-88 328.2 204 72.1
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 6.0e-88 327.8 204 71.6
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.3e-87 326.6 204 72.1
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 1.3e-87 326.6 204 70.1
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.3e-87 325.9 208 72.6
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 3.0e-87 325.5 204 71.1
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 3.9e-87 325.1 204 69.6
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 6.6e-87 324.3 204 70.1
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 1.9e-86 322.8 204 72.1
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 1.9e-86 322.8 205 71.7
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 3.3e-86 322.0 204 69.6
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 7.3e-86 320.9 204 68.6
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 9.6e-86 320.5 201 71.6
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 2.1e-85 319.3 194 72.2
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 2.8e-85 318.9 204 69.6
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 8.1e-85 317.4 204 69.6
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 2.4e-84 315.8 204 69.1
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 9.0e-84 313.9 205 68.8
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 1.2e-83 313.5 204 68.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.5e-83 313.2 204 68.1
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 3.4e-83 312.0 204 69.6
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 7.6e-83 310.8 204 68.1
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 7.6e-83 310.8 204 68.1
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 9.9e-83 310.5 203 68.0
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.9e-82 308.9 204 67.2
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.9e-82 308.9 204 66.7
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 2.9e-82 308.9 204 67.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 8.4e-82 307.4 203 68.5
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.1e-81 307.0 203 67.0
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 1.2e-80 303.5 202 68.8
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 2.1e-80 302.8 206 67.5
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 2.7e-80 302.4 204 67.6
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 3.5e-80 302.0 186 71.0
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 3.9e-79 298.5 205 66.3
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 3.9e-79 298.5 205 66.3
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 3.9e-79 298.5 178 77.0
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 4.3e-78 295.0 206 68.9
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 4.3e-78 295.0 164 80.5
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 9.6e-78 293.9 206 68.9
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 2.1e-77 292.7 211 65.9
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 8.1e-77 290.8 203 66.5
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 6.9e-76 287.7 182 70.9
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 5.8e-75 284.6 205 63.9
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 2.2e-74 282.7 182 70.9
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 6.4e-74 281.2 185 69.2
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 2.1e-72 276.2 145 86.2
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 5.1e-71 271.6 165 74.5
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.3e-70 268.9 163 74.2
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 1.4e-68 263.5 161 72.7
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 8.4e-66 254.2 207 56.5
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 3.5e-64 248.8 161 69.6
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 6.7e-63 244.6 146 76.7
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.8e-60 236.5 215 49.3
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.8e-60 236.5 215 49.3
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 4.5e-59 231.9 187 57.2
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 7.6e-59 231.1 147 68.7
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.2e-58 229.6 215 48.8
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 2.3e-55 219.5 212 49.1
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 1.1e-54 217.2 148 66.9
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 5.7e-54 214.9 168 59.5
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 7.4e-54 214.5 122 79.5
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 3.7e-53 212.2 144 63.2
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 3.2e-49 199.1 214 46.3
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 3.6e-48 195.7 121 69.4
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 1.0e-42 177.6 106 72.6
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 3.8e-42 175.6 106 71.7
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 3.6e-40 169.1 156 51.3
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.2e-35 154.1 145 53.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.5e-33 147.1 156 47.4
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 7.2e-33 144.8 168 41.1
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 2.8e-29 132.9 209 34.4
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 2.2e-26 123.2 105 57.1
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 3.8e-26 122.5 174 36.8
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 1.1e-25 120.9 277 26.4
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 6.1e-24 115.2 199 34.2
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 1.6e-19 100.5 59 78.0
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 8.6e-18 94.7 62 71.0
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 6.8e-15 85.1 54 64.8


User provided reference genes

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