Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.5e-33 144.8 71 100.0
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 3.1e-31 137.9 73 95.9
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.9e-28 128.6 71 87.3
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 1.9e-28 128.6 73 89.0
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 5.4e-28 127.1 71 87.3
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.0e-27 125.2 73 84.9
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 2.7e-27 124.8 72 87.5
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 3.5e-27 124.4 73 84.9
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 7.8e-27 123.2 71 85.9
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 1.0e-26 122.9 71 81.7
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 1.7e-26 122.1 71 84.5
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 2.3e-26 121.7 71 88.7
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 2.3e-26 121.7 69 85.5
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 3.0e-26 121.3 72 87.5
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 3.0e-26 121.3 73 82.2
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 3.0e-26 121.3 71 81.7
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 3.9e-26 120.9 71 84.5
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 3.9e-26 120.9 71 84.5
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 3.9e-26 120.9 71 85.9
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 3.9e-26 120.9 71 87.3
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 3.9e-26 120.9 72 81.9
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 5.0e-26 120.6 71 84.5
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 5.0e-26 120.6 71 83.1
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 6.6e-26 120.2 72 84.7
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 8.6e-26 119.8 73 80.8
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 8.6e-26 119.8 69 79.7
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.5e-25 119.0 73 83.6
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.9e-25 118.6 73 84.9
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.9e-25 118.6 71 83.1
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.5e-25 118.2 73 84.9
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 2.5e-25 118.2 72 83.3
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 2.5e-25 118.2 72 83.3
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 2.5e-25 118.2 68 85.3
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 3.3e-25 117.9 71 84.5
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 3.3e-25 117.9 73 79.5
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 3.3e-25 117.9 73 79.5
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 3.3e-25 117.9 73 79.5
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 4.3e-25 117.5 73 80.8
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 4.3e-25 117.5 72 83.3
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 74.6
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 85.9
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 7.3e-25 116.7 72 81.9
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 9.5e-25 116.3 65 86.2
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 9.5e-25 116.3 71 80.3
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 9.5e-25 116.3 70 82.9
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.2e-24 115.9 71 80.3
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.2e-24 115.9 69 78.3
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.2e-24 115.9 73 80.8
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 1.6e-24 115.5 71 80.3
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 2.1e-24 115.2 71 78.9
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 80.3
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 80.3
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 3.6e-24 114.4 73 79.5
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 3.6e-24 114.4 71 81.7
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 3.6e-24 114.4 71 81.7
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 3.6e-24 114.4 72 77.8
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 80.3
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 6.2e-24 113.6 71 80.3
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 8.0e-24 113.2 71 80.3
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 8.0e-24 113.2 71 80.3
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 8.0e-24 113.2 72 77.8
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 8.0e-24 113.2 72 77.8
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.1e-23 112.8 71 81.7
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.1e-23 112.8 71 78.9
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 1.1e-23 112.8 71 77.5
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 1.4e-23 112.5 71 74.6
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.8e-23 112.1 69 76.8
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.8e-23 112.1 70 77.1
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 77.5
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 77.5
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 3.1e-23 111.3 71 77.5
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 4.0e-23 110.9 71 77.5
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 76.1
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 8.9e-23 109.8 72 76.4
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 78.9
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 8.9e-23 109.8 71 78.9
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 1.2e-22 109.4 70 77.1
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 1.2e-22 109.4 72 75.0
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.5e-22 109.0 70 74.3
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 77.5
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 3.4e-22 107.8 69 71.0
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 4.4e-22 107.5 71 76.1
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 9.8e-22 106.3 69 76.8
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 9.8e-22 106.3 69 75.4
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 2.9e-21 104.8 81 64.2
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 8.3e-21 103.2 63 82.5
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 2.4e-20 101.7 63 71.4
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 4.1e-20 100.9 62 82.3
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 4.1e-20 100.9 69 73.9
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 4.1e-20 100.9 69 73.9
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.2e-19 99.4 64 78.1
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 1.2e-19 99.4 64 78.1
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 7.8e-19 96.7 64 71.9
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 7.8e-19 96.7 63 73.0
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 1.0e-18 96.3 64 76.6
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 3.6e-16 87.8 60 70.0
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 1.8e-15 85.5 59 69.5
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 9.9e-14 79.7 65 67.7
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 1.3e-13 79.3 51 82.4
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 4.1e-12 74.3 42 81.0
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 6.6e-10 67.0 64 53.1


User provided reference genes

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