Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-130 468.8 240 100.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.7e-121 438.3 228 98.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-98 362.8 242 77.7
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.5e-98 360.9 242 77.3
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.1e-92 342.8 244 74.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 6.4e-89 331.3 232 74.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.3e-85 318.9 241 69.7
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 8.0e-84 314.3 237 70.0
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.0e-83 313.9 243 68.3
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.7e-81 306.6 227 70.9
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.4e-80 302.8 233 67.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.6e-79 300.1 221 68.3
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.6e-79 300.1 223 69.1
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 3.0e-78 295.8 219 67.6
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-77 293.1 213 73.2
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.5e-77 292.7 233 65.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.3e-77 292.0 222 66.2
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.6e-76 290.0 222 66.2
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.1e-76 289.7 233 67.4
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 5.2e-75 285.0 219 63.9
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-74 283.9 219 64.8
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.0e-74 283.1 232 65.5
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 2.0e-74 283.1 230 64.3
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.4e-74 282.0 217 67.7
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.9e-73 279.3 221 66.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.9e-73 279.3 220 65.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.4e-72 276.9 220 64.1
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.2e-72 275.8 230 61.7
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.2e-72 275.8 230 61.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.2e-72 275.8 230 61.7
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.1e-72 275.4 223 67.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.1e-72 274.6 230 62.2
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-71 273.9 242 58.3
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-71 273.9 234 62.4
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.2e-71 273.9 227 63.4
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.6e-71 273.5 233 60.5
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.7e-71 272.7 221 62.9
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.7e-71 272.7 223 63.2
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.7e-71 272.7 232 62.1
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 7.8e-71 271.2 230 61.3
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.0e-70 270.8 222 64.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.3e-70 269.6 230 60.9
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.3e-70 269.6 230 60.4
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.0e-70 269.2 217 62.7
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 4.3e-69 265.4 228 59.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.3e-69 265.4 233 59.7
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 7.3e-69 264.6 195 67.7
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-68 263.8 238 58.0
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 2.3e-67 259.6 224 63.4
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.2e-67 258.5 220 60.9
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 7.6e-66 254.6 227 58.6
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 9.9e-66 254.2 200 65.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.3e-65 253.8 232 56.9
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.2e-65 253.1 224 61.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.9e-65 251.9 237 55.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 4.9e-65 251.9 224 60.3
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.9e-65 251.9 227 56.8
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 6.4e-65 251.5 225 60.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.9e-64 250.0 231 55.8
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.4e-64 249.6 225 56.4
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.2e-64 249.2 220 59.5
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 3.2e-64 249.2 220 63.2
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.1e-64 248.1 242 53.7
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.2e-64 247.7 222 58.6
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.7e-63 246.1 218 58.7
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-62 243.4 234 53.0
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.0e-62 242.7 223 58.7
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-61 240.7 180 66.1
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.5e-61 239.6 234 53.0
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 4.3e-61 238.8 234 53.0
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.8e-60 236.1 225 56.0
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.6e-60 235.7 182 65.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.4e-59 233.8 232 55.2
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.8e-59 233.4 220 56.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.4e-59 233.0 176 64.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 6.4e-57 224.9 205 60.0
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 8.4e-57 224.6 174 62.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.1e-56 224.2 196 58.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.4e-56 223.8 216 53.2
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.9e-56 223.4 217 55.8
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.4e-56 223.0 217 55.3
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 5.4e-56 221.9 220 53.6
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 3.5e-55 219.2 220 54.1
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.0e-54 217.6 220 53.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.3e-54 217.2 197 56.3
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.0e-54 216.1 177 59.9
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.0e-54 216.1 177 59.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.1e-53 214.2 214 52.3
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.1e-53 214.2 197 55.3
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.5e-53 213.8 217 54.8
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.9e-53 213.4 230 50.4
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-53 213.4 219 55.3
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.3e-53 212.6 231 49.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.6e-53 211.8 233 50.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 7.3e-53 211.5 217 52.1
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.8e-52 209.5 233 49.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.8e-52 209.5 233 49.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.8e-52 209.5 146 67.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.2e-52 208.4 197 53.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.1e-52 208.0 180 65.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.8e-51 206.8 181 59.1
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.8e-51 206.8 184 58.7
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 4.0e-51 205.7 167 63.5
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.0e-51 205.7 231 50.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 9.0e-51 204.5 234 50.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.2e-50 204.1 173 63.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.5e-50 203.8 181 59.1
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.0e-50 203.4 218 50.9
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.4e-50 202.6 220 52.7
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 5.8e-50 201.8 231 50.2
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 9.9e-50 201.1 181 58.6
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 9.9e-50 201.1 214 50.5
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.3e-49 200.7 231 51.1
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-49 200.7 222 50.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-49 200.7 222 50.0
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.2e-49 199.9 217 53.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.9e-49 199.5 220 51.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 4.9e-49 198.7 218 51.4
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 6.4e-49 198.4 212 52.8
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.1e-48 197.6 222 46.8
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.4e-48 196.4 221 52.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.6e-47 193.7 181 55.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.6e-47 193.7 181 55.8
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 4.6e-47 192.2 234 48.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.0e-46 191.0 188 54.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.3e-46 190.7 184 54.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.3e-46 190.7 184 55.4
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 3.0e-46 189.5 167 56.9
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 5.1e-46 188.7 165 58.2
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 6.7e-46 188.3 164 56.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.3e-44 184.1 212 50.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.8e-44 183.0 216 50.0
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 3.7e-44 182.6 227 47.1
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.4e-43 179.9 216 47.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 6.9e-43 178.3 229 46.3
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.2e-42 177.6 211 46.0
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.8e-42 175.3 204 52.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.6e-42 174.9 105 81.9
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.4e-40 169.9 116 68.1
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.6e-39 167.2 234 43.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 6.0e-39 165.2 150 54.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.3e-38 164.1 152 55.3
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.3e-38 163.3 122 64.8
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 5.1e-38 162.2 117 65.8
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 8.2e-36 154.8 235 40.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.9e-35 151.8 131 55.0
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.1e-27 127.9 125 49.6
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-25 120.2 118 49.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-23 114.4 82 67.1
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.1e-23 113.6 132 50.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.5e-16 90.1 102 42.2
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.2e-16 89.4 72 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.8e-14 84.0 214 29.4
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.9e-14 82.8 212 29.7
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.5e-13 80.9 95 38.9
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 7.4e-13 78.6 183 27.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 9.7e-13 78.2 184 28.3
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-06 55.8 93 30.1


User provided reference genes

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