Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 0.0e+00 1340.1 671 100.0
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.1e-255 886.7 697 68.4
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.0e-221 773.9 660 63.9
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.0e-209 733.0 695 58.3
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.8e-187 659.4 614 58.1
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.3e-175 619.0 689 51.1
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 7.0e-170 601.7 700 48.6
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 4.6e-169 599.0 629 53.7
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 3.7e-163 579.3 717 47.0
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 6.4e-163 578.6 712 47.1
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 7.1e-162 575.1 676 48.1
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 8.6e-160 568.2 680 47.5
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.4e-157 560.8 319 89.3
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.1e-154 551.2 696 46.1
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.9e-154 550.4 686 46.9
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 2.7e-153 546.6 684 45.9
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.3e-152 544.3 681 46.5
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.3e-152 543.5 682 46.5
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.5e-151 540.8 676 46.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.1e-150 537.0 684 46.3
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.2e-148 531.2 676 45.9
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.9e-148 528.1 712 44.8
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.9e-148 528.1 671 46.3
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 9.9e-148 528.1 676 45.6
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-146 523.5 673 46.5
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 4.2e-146 522.7 677 46.4
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 7.1e-146 521.9 676 45.9
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 7.8e-145 518.5 546 53.5
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 2.3e-144 516.9 674 44.1
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 3.0e-144 516.5 694 44.1
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.1e-143 514.6 708 43.4
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.9e-143 513.8 563 52.4
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 5.8e-140 502.3 689 44.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.4e-138 496.9 668 44.6
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.1e-136 489.2 681 43.9
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 9.6e-135 485.0 681 44.1
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 2.8e-134 483.4 691 42.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.7e-134 483.0 676 41.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 6.9e-133 478.8 683 43.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 9.0e-133 478.4 686 43.0
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 2.6e-132 476.9 684 41.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 9.9e-132 474.9 686 42.0
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.3e-131 474.6 687 41.0
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 4.2e-130 469.5 679 41.8
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 9.3e-130 468.4 566 46.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.7e-129 466.8 700 42.4
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.5e-127 461.1 680 40.1
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.9e-127 460.7 593 44.4
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.3e-126 458.0 653 42.7
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 8.2e-126 455.3 673 41.2
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 2.4e-125 453.8 685 40.7
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 2.6e-124 450.3 686 39.7
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.3e-123 448.0 688 38.2
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 2.2e-123 447.2 687 39.3
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 8.4e-123 445.3 522 46.6
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 1.2e-121 441.4 686 40.2
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 1.6e-121 441.0 677 38.7
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 4.6e-121 439.5 684 40.4
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 2.3e-120 437.2 676 39.3
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.5e-114 417.2 684 39.5
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 2.5e-114 417.2 696 37.5
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 4.2e-114 416.4 692 39.0
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 6.1e-113 412.5 684 38.9
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 3.3e-111 406.8 694 38.0
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 7.4e-111 405.6 693 38.1
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.7e-110 404.4 691 38.8
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 4.1e-109 399.8 654 39.0
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 3.0e-104 383.6 717 36.7
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.7e-102 377.9 607 39.4
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 2.2e-102 377.5 681 35.8
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 8.2e-102 375.6 698 37.1
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 7.0e-101 372.5 716 34.8
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.2e-100 371.7 663 37.1
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 2.0e-100 370.9 617 38.6
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 5.0e-99 366.3 615 38.0
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 5.0e-99 366.3 695 36.4
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.9e-98 364.4 670 35.5
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 7.2e-98 362.5 612 37.7
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.6e-97 361.3 656 36.6
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.1e-97 360.9 707 34.9
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.7e-94 351.3 704 35.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-94 350.9 575 39.1
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.8e-94 350.5 609 38.3
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.1e-93 348.6 694 34.9
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.5e-92 343.6 745 33.6
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.5e-92 343.6 687 34.8
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 4.5e-92 343.2 412 47.1
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 6.5e-91 339.3 512 39.6
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 6.5e-83 312.8 681 34.1
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.9e-82 311.2 372 47.8
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.3e-80 304.3 436 42.0
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 2.0e-79 301.2 490 38.4
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.7e-78 297.0 650 34.6
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 4.7e-73 280.0 448 39.5
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.4e-69 267.7 392 40.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.6e-68 265.0 620 32.9
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.0e-67 262.3 620 32.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.2e-65 255.4 648 32.7
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 2.9e-62 244.2 391 42.5
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 3.3e-58 230.7 301 43.9
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.4e-37 160.2 200 48.5
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.6e-35 153.3 379 33.0
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 8.1e-33 146.4 161 47.8
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.7e-28 131.3 193 45.6
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.6e-20 104.0 145 42.1
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 5.1e-19 100.5 380 25.0
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 8.1e-17 93.2 217 31.8
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 3.4e-15 87.8 328 25.9
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 2.5e-13 81.6 98 49.0
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.0e-12 77.0 69 60.9
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.0e-12 77.0 69 60.9
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 6.0e-12 77.0 647 24.3
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 2.5e-10 71.6 86 46.5
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 3.3e-10 71.2 681 21.9
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.9e-08 63.5 290 23.8
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.4e-07 61.2 122 32.8
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.6e-07 60.1 187 30.5


User provided reference genes

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