Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 8.5e-90 333.6 160 100.0
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.8e-84 315.8 160 95.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 4.1e-84 314.7 157 95.5
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 7.0e-84 313.9 160 94.4
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.2e-83 313.2 160 94.4
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 2.3e-82 308.9 160 93.1
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.1e-81 306.6 158 93.7
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 5.5e-81 304.3 160 91.2
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 3.0e-79 298.5 160 88.8
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 4.0e-79 298.1 160 89.4
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.5e-78 296.2 160 88.8
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 3.4e-78 295.0 160 89.4
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 3.4e-78 295.0 160 89.4
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 4.4e-78 294.7 160 90.0
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 8.3e-77 290.4 149 94.0
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.4e-76 289.7 160 88.8
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 5.4e-76 287.7 158 88.0
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 7.0e-76 287.3 158 88.0
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 8.6e-74 280.4 158 86.7
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 1.1e-73 280.0 157 87.3
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 8.0e-72 273.9 159 84.9
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 1.7e-69 266.2 158 82.3
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.4e-68 261.2 160 82.5
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.3e-66 255.8 157 80.9
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.3e-66 255.8 157 80.9
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.3e-66 255.8 157 80.9
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 6.6e-66 254.2 157 80.3
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 6.6e-66 254.2 157 80.3
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.2e-64 250.0 157 79.0
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 6.2e-64 247.7 160 78.8
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 5.8e-62 241.1 157 77.1
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 5.4e-60 234.6 158 75.3
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.5e-59 231.9 157 75.2
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.1e-55 220.3 142 78.2
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 2.3e-55 219.2 126 86.5
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 9.9e-54 213.8 122 83.6
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.7e-53 211.8 145 77.9
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 2.5e-49 199.1 102 93.1
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.3e-49 197.6 128 78.1
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 8.4e-45 184.1 114 78.9
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 7.1e-44 181.0 101 84.2
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 1.6e-43 179.9 119 77.3
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 1.8e-39 166.4 88 88.6
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 8.4e-37 157.5 88 85.2
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 7.1e-36 154.5 97 78.4
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 3.3e-33 145.6 71 94.4
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 9.6e-33 144.1 113 67.3
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 2.1e-32 142.9 79 84.8
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 7.6e-30 134.4 84 76.2
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 3.8e-29 132.1 74 86.5
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.9e-28 129.8 80 80.0
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 4.2e-28 128.6 83 72.3
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 4.2e-28 128.6 83 72.3
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 3.0e-26 122.5 62 91.9
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 9.6e-25 117.5 83 67.5
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.5e-22 110.2 72 79.2
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 9.3e-20 100.9 60 83.3
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 1.6e-19 100.1 64 79.7
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 3.5e-19 99.0 71 67.6
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.0e-18 97.4 51 86.3
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.9e-17 93.2 58 79.3
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.2e-16 87.8 59 74.6
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.8e-15 86.7 44 88.6
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 2.6e-14 82.8 49 77.6
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 3.8e-13 79.0 74 58.1
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.2e-11 73.9 45 82.2
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 6.1e-11 71.6 56 66.1
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 9.0e-07 57.8 31 90.3


User provided reference genes

Program Settings