Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 0.0e+00 1327.8 662 100.0
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 0.0e+00 1123.6 664 84.8
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 0.0e+00 1114.8 662 84.4
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 0.0e+00 1091.6 662 82.3
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 4.1e-311 1070.8 660 80.0
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.5e-310 1067.4 659 80.3
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 2.3e-306 1055.0 652 79.4
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.9e-305 1052.0 619 82.9
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 4.6e-299 1030.8 652 77.6
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 3.9e-298 1027.7 652 77.0
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 1.4e-295 1019.2 647 77.3
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 7.7e-294 1013.4 647 77.0
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.3e-293 1012.7 655 78.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 7.2e-292 1006.9 652 76.2
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 9.4e-292 1006.5 652 76.1
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.6e-291 1005.7 647 76.4
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 7.9e-291 1003.4 654 76.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 7.9e-291 1003.4 652 76.1
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 3.0e-290 1001.5 654 76.3
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.1e-290 1000.7 645 76.4
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 3.1e-287 991.5 649 75.2
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 6.9e-287 990.3 654 75.1
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 3.8e-285 984.6 654 74.8
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.9e-284 982.2 666 74.2
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.2e-284 981.1 649 74.6
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 9.4e-284 979.9 662 73.3
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.7e-283 978.4 657 74.4
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.7e-283 978.4 649 74.6
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 4.7e-283 977.6 652 74.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.4e-282 976.1 649 73.2
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.0e-282 974.9 644 74.2
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 3.9e-282 974.5 664 75.8
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 6.7e-282 973.8 649 75.0
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.1e-281 973.0 654 74.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.5e-281 972.6 652 73.8
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 7.4e-281 970.3 664 73.3
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 7.4e-281 970.3 672 72.8
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.2e-280 968.8 662 71.0
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.8e-280 968.4 664 73.5
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 2.8e-280 968.4 656 72.7
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 4.8e-280 967.6 656 73.3
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 8.2e-280 966.8 659 73.9
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.4e-279 966.1 649 72.9
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 5.0e-277 957.6 646 72.4
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.1e-276 956.4 655 72.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 2.5e-276 955.3 649 72.3
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 3.2e-276 954.9 654 73.1
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 4.2e-276 954.5 654 71.9
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 7.2e-276 953.7 662 72.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.1e-275 952.2 654 71.9
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 7.5e-273 943.7 654 71.4
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.8e-271 939.1 664 72.7
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.4e-271 938.7 652 71.8
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.0e-269 933.3 647 71.9
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.9e-268 929.1 667 70.9
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 4.2e-268 927.9 652 71.5
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.4e-266 922.9 579 78.2
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.4e-266 922.9 666 69.8
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 3.0e-266 921.8 644 71.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 5.2e-266 921.0 655 70.7
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 3.7e-264 914.8 649 69.0
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 3.7e-264 914.8 649 69.0
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 8.3e-264 913.7 649 68.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 9.1e-263 910.2 653 69.7
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 1.2e-262 909.8 658 69.0
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 2.0e-262 909.1 649 68.6
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 3.5e-262 908.3 649 68.7
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.3e-261 906.4 660 67.9
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.3e-261 906.4 649 68.7
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.7e-261 906.0 649 68.3
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 6.5e-261 904.0 649 68.9
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 5.5e-260 901.0 656 68.8
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 1.6e-259 899.4 651 68.5
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 2.1e-259 899.0 649 68.6
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.4e-257 891.3 650 68.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 4.1e-255 884.8 617 71.3
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.0e-249 865.9 646 66.6
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 9.8e-249 863.6 661 65.2
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 6.0e-246 854.4 660 67.1
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.0e-245 853.6 660 64.2
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.0e-245 853.6 648 65.6
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.9e-245 851.7 525 79.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 6.6e-245 850.9 660 63.9
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.1e-243 845.9 652 66.3
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 6.2e-243 844.3 652 66.7
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.8e-242 842.8 649 65.3
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.8e-242 842.8 648 64.8
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 3.5e-238 828.6 693 63.5
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 2.8e-227 792.3 562 68.0
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.1e-222 776.2 647 63.4
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.4e-216 754.2 664 62.3
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.8e-210 736.5 554 67.3
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 3.5e-206 722.2 620 61.1
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.1e-203 713.0 677 57.0
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 3.4e-201 705.7 658 58.7
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.4e-199 700.3 627 59.2
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 5.5e-199 698.4 652 60.0
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 9.4e-183 644.4 443 72.2
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 5.1e-181 638.6 508 64.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.1e-178 630.9 583 58.3
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 5.3e-170 602.1 663 48.3
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 8.0e-166 588.2 669 47.7
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 1.3e-160 570.9 663 45.9
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.8e-157 560.5 656 46.6
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.6e-134 483.0 632 41.3
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 9.3e-90 335.5 340 53.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.5e-89 333.6 227 68.7
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 2.8e-54 217.6 291 46.0
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 5.5e-50 203.4 143 65.7
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 8.0e-49 199.5 121 79.3
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 5.2e-48 196.8 350 34.6
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.2e-46 191.4 156 64.1
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.8e-45 188.3 160 60.0
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 4.2e-42 177.2 107 78.5
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 3.6e-41 174.1 107 77.6
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 4.0e-40 170.6 110 80.0
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.8e-40 169.9 181 50.3
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 5.7e-39 166.8 131 63.4
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.3e-38 163.3 155 57.4
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.2e-36 159.1 155 55.5
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 4.5e-36 157.1 228 37.3
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.7e-35 155.2 94 81.9
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.7e-30 138.7 85 77.6
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.8e-30 137.9 100 70.0
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.8e-30 137.9 83 78.3
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-28 132.5 80 78.8
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.5e-26 124.8 92 70.7
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 4.7e-25 120.6 101 57.4
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.4e-21 109.0 88 60.2
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 7.8e-20 103.2 531 24.7
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 6.8e-16 90.1 54 75.9
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-15 89.0 56 73.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.9e-14 84.0 48 83.3
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 6.4e-14 83.6 89 50.6
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 9.2e-13 79.7 244 25.8
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 2.2e-06 58.5 151 28.5


User provided reference genes

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