Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-98 361.3 181 100.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-70 269.6 164 86.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-69 266.9 164 85.4
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-69 266.9 164 85.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.0e-64 247.7 159 81.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.7e-62 243.0 164 76.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.0e-62 241.5 193 67.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.6e-60 236.5 164 76.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.7e-60 235.7 167 73.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.7e-58 228.0 164 73.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 9.7e-58 227.3 164 72.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.7e-57 225.3 156 74.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.1e-56 223.8 164 70.1
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.1e-56 222.2 164 70.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 5.3e-56 221.5 164 67.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-55 219.9 164 70.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.0e-55 219.5 164 70.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.5e-55 218.8 164 68.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.5e-55 218.8 164 70.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.3e-54 216.9 164 67.7
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.9e-54 215.7 173 63.6
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 8.5e-54 214.2 164 65.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.1e-53 213.8 173 63.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-53 213.4 137 82.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.5e-53 213.4 164 67.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.5e-53 213.4 164 67.7
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.9e-53 213.0 162 69.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.9e-53 213.0 164 66.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.9e-53 213.0 164 65.9
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.9e-53 213.0 164 65.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.9e-53 213.0 164 65.9
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.9e-53 213.0 162 69.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.2e-53 211.8 164 67.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 7.2e-53 211.1 164 63.4
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.6e-52 209.9 174 62.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.7e-52 209.1 164 66.5
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 3.6e-52 208.8 162 66.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.7e-52 208.4 174 62.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.7e-52 208.4 174 62.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.1e-52 208.0 174 62.1
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.1e-52 208.0 162 68.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.0e-52 207.6 164 64.6
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-51 206.8 162 66.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.8e-51 206.5 164 63.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.8e-51 206.5 162 66.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.3e-51 206.1 164 65.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.0e-51 205.7 164 62.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.0e-51 205.3 164 62.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.0e-51 205.3 164 62.8
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 4.0e-51 205.3 164 63.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 5.2e-51 204.9 164 64.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 5.2e-51 204.9 164 63.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 5.2e-51 204.9 164 65.2
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.8e-51 204.1 162 64.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 8.8e-51 204.1 164 64.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 8.8e-51 204.1 164 61.6
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.8e-51 204.1 164 63.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.8e-51 204.1 162 66.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-50 203.8 164 64.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-50 203.8 164 64.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-50 203.8 164 64.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-50 203.8 164 64.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-50 203.4 164 63.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.6e-50 202.6 164 64.6
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.6e-50 202.6 164 64.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.6e-50 202.6 164 61.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.4e-50 202.2 164 63.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.4e-50 202.2 162 64.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 4.4e-50 201.8 164 64.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.7e-50 201.4 162 64.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 5.7e-50 201.4 164 64.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.5e-50 201.1 164 64.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 9.8e-50 200.7 162 64.2
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 9.8e-50 200.7 162 64.2
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-49 200.3 164 61.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.3e-49 200.3 164 61.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-49 199.9 178 60.1
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.7e-49 199.9 164 61.0
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.7e-49 199.9 173 61.3
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.7e-49 199.9 164 64.0
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.2e-49 199.5 162 63.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.2e-49 199.5 185 57.3
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.2e-49 199.5 164 60.4
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.2e-49 199.5 164 64.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.8e-49 199.1 178 60.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.7e-49 198.7 164 64.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.7e-49 198.7 164 64.0
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.3e-49 198.0 162 62.3
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.3e-49 198.0 162 62.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.3e-49 197.6 164 62.2
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 8.3e-49 197.6 164 61.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.1e-48 197.2 162 62.3
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.1e-48 197.2 164 64.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.1e-48 197.2 162 62.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-48 196.8 132 78.0
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.4e-48 196.8 162 62.3
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.4e-48 196.8 162 63.0
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 3.1e-48 195.7 164 61.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.1e-48 195.7 164 61.0
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.1e-48 195.7 164 62.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.1e-48 195.3 163 62.0
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.1e-48 195.3 162 61.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.4e-48 194.9 152 66.4
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 7.0e-48 194.5 164 59.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.2e-47 193.7 163 62.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.6e-47 193.4 193 53.9
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-47 193.0 172 59.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.7e-47 192.6 164 60.4
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.5e-47 192.2 164 59.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.5e-47 191.8 162 61.7
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.0e-46 190.7 156 62.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.3e-46 189.5 164 59.1
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.8e-46 188.7 141 70.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.8e-46 188.7 164 57.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.0e-46 188.3 162 59.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 6.6e-46 188.0 166 57.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.1e-45 187.2 196 51.5
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.5e-45 186.8 162 60.5
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.3e-45 185.7 190 54.2
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.5e-45 184.9 171 56.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 5.5e-45 184.9 165 58.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 9.5e-45 184.1 162 58.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 9.5e-45 184.1 144 68.1
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-44 183.7 175 54.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.6e-44 183.3 175 53.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.8e-44 182.6 157 63.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.7e-44 181.8 162 59.3
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.0e-43 180.6 161 57.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.9e-43 177.6 153 60.8
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.5e-42 176.8 164 56.7
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.5e-42 176.8 173 53.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 3.4e-42 175.6 170 55.9
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.7e-41 173.3 162 56.2
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.1e-40 170.6 165 53.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.1e-40 168.7 162 54.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.4e-40 168.3 176 51.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.5e-39 165.2 155 55.5
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-37 160.6 156 55.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.5e-37 157.5 136 69.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-34 149.8 152 55.9
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-27 127.1 149 49.0
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 8.9e-27 124.4 99 63.6
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.0e-24 114.8 88 64.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 7.0e-24 114.8 106 55.7
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.3e-22 110.5 88 61.4
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.3e-21 105.9 166 36.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-18 97.4 76 67.1
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.0e-18 96.7 165 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.3e-17 91.3 165 32.1
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.3e-14 83.2 152 34.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.1e-13 80.9 160 33.1
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.9e-13 80.1 74 48.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.4e-11 73.2 72 56.9
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.4e-10 69.3 63 57.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 9.9e-10 67.8 141 31.9
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.3e-06 57.4 50 52.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.3e-06 57.4 50 52.0


User provided reference genes

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