Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.9e-28 126.3 61 100.0
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.7e-22 108.6 61 86.9
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.6e-17 92.0 48 89.6
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.2e-17 89.7 48 87.5
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-13 79.3 43 81.4
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.9e-13 78.6 40 85.0
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.9e-13 78.6 40 85.0
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.9e-13 78.6 40 85.0
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.9e-13 78.6 40 85.0
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 1.9e-13 78.6 40 85.0
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 5.5e-13 77.0 40 82.5
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 5.5e-13 77.0 40 82.5
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.4e-13 76.3 37 89.2
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.2e-12 75.9 40 80.0
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 1.2e-12 75.9 39 82.1
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 1.6e-12 75.5 40 80.0
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 2.1e-12 75.1 39 82.1
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 2.1e-12 75.1 39 82.1
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 2.1e-12 75.1 40 80.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 2.1e-12 75.1 40 80.0
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.1e-12 75.1 40 80.0
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 2.7e-12 74.7 40 77.5
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.7e-12 74.7 40 80.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 3.6e-12 74.3 39 82.1
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 3.6e-12 74.3 39 82.1
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.6e-12 73.9 38 81.6
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.6e-12 73.9 38 81.6
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 4.6e-12 73.9 38 81.6
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 6.1e-12 73.6 40 80.0
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.0e-11 72.8 39 82.1
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 1.4e-11 72.4 40 80.0
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.4e-11 72.4 39 79.5
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 3.0e-11 71.2 40 77.5
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 5.1e-11 70.5 40 75.0
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 6.7e-11 70.1 44 68.2
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 8.8e-11 69.7 39 76.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 8.8e-11 69.7 40 75.0
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 8.8e-11 69.7 40 75.0
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 1.1e-10 69.3 39 74.4
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.1e-10 69.3 39 76.9
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.0e-10 68.6 37 78.4
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.0e-10 68.6 37 78.4
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.0e-10 68.6 39 74.4
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 3.3e-10 67.8 36 77.8
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 4.4e-10 67.4 40 75.0
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 4.4e-10 67.4 36 75.0
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 4.4e-10 67.4 40 72.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 5.7e-10 67.0 40 75.0
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 5.7e-10 67.0 40 75.0
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 7.4e-10 66.6 40 75.0
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 7.4e-10 66.6 41 73.2
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 9.7e-10 66.2 40 72.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 9.7e-10 66.2 39 71.8
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 9.7e-10 66.2 36 72.2
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 1.3e-09 65.9 39 74.4
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.3e-09 65.9 40 72.5
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.3e-09 65.9 35 77.1
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.7e-09 65.5 36 75.0
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.7e-09 65.5 49 63.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.7e-09 65.5 36 72.2
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.7e-09 65.5 39 71.8
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.7e-09 65.5 39 71.8
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.7e-09 65.5 40 72.5
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.2e-09 65.1 40 70.0
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.2e-09 65.1 41 70.7
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 2.2e-09 65.1 41 70.7
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 2.2e-09 65.1 41 70.7
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 2.8e-09 64.7 41 70.7
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 3.7e-09 64.3 35 74.3
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 4.8e-09 63.9 39 71.8
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 4.8e-09 63.9 39 71.8
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 6.3e-09 63.5 47 63.8
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 6.3e-09 63.5 40 70.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 6.3e-09 63.5 41 68.3
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 6.3e-09 63.5 40 70.0
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 6.3e-09 63.5 40 70.0
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 8.2e-09 63.2 40 67.5
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.1e-08 62.8 52 63.5
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.8e-08 62.0 36 77.8
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.8e-08 62.0 37 70.3
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.4e-08 61.6 40 67.5
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 3.1e-08 61.2 43 67.4
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 3.1e-08 61.2 37 67.6
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 4.1e-08 60.8 40 65.0
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 4.1e-08 60.8 40 65.0
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 4.1e-08 60.8 40 65.0
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 4.1e-08 60.8 40 65.0
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.1e-08 60.8 42 69.0
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 4.1e-08 60.8 39 69.2
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 5.3e-08 60.5 39 64.1
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.5e-07 58.9 39 69.2
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 4.5e-07 57.4 41 63.4
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.5e-06 53.5 39 66.7


User provided reference genes

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