Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018129 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-139 498.4 258 100.0
CSS0023125 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-21 105.1 67 82.1
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-20 102.4 56 91.1
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.1e-17 91.7 56 76.8
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-16 89.7 55 80.0
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-16 88.6 121 47.1
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.0e-15 88.2 54 75.9
CSS0003655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-15 86.7 55 74.5
CSS0037972 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-15 86.7 55 74.5
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-15 86.7 55 74.5
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-15 86.7 91 57.1
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 6.5e-15 85.5 55 76.4
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.5e-15 85.1 132 45.5
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-14 84.7 54 74.1
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-14 84.3 55 70.9
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-14 84.0 56 73.2
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-14 84.0 56 73.2
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 1.9e-14 84.0 80 57.5
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-14 84.0 56 71.4
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-14 84.0 55 72.7
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-14 83.2 55 72.7
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-14 83.2 54 70.4
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-14 83.2 49 81.6
Nn8g41156 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.2e-14 82.8 56 71.4
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.2e-14 82.0 55 67.3
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.4e-14 81.6 105 46.7
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-13 81.3 56 71.4
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-13 81.3 56 71.4
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-13 81.3 118 44.1
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-13 80.9 88 53.4
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.6e-13 80.9 57 70.2
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-13 80.5 54 68.5
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-13 80.5 73 57.5
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.1e-13 80.5 69 58.0
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-13 80.1 72 56.9
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-13 80.1 118 44.1
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-13 80.1 56 69.6
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-13 80.1 59 62.7
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-13 80.1 54 68.5
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-13 80.1 54 68.5
Atru.chr5.2716 Acer truncatum HOM05D000002 ORTHO05D000001 3.6e-13 79.7 56 71.4
CSS0008047 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-13 79.7 53 71.7
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-13 79.7 88 53.4
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-13 79.7 88 52.3
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-13 79.7 54 72.2
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-13 79.7 56 71.4
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-13 79.7 56 71.4
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-13 79.7 90 54.4
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-13 79.7 90 54.4
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-13 79.3 56 69.6
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.7e-13 79.3 53 73.6
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-13 79.0 56 67.9
Hma1.2p1_0764F.1_g215020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.1e-13 79.0 56 69.6
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.0e-13 78.6 90 54.4
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.0e-13 78.6 56 67.9
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.0e-13 78.6 56 67.9
FvH4_1g18381 Fragaria vesca HOM05D000002 ORTHO05D000001 1.0e-12 78.2 51 74.5
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-12 78.2 88 52.3
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-12 77.8 48 72.9
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-12 77.8 57 64.9
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-12 77.4 51 70.6
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.8e-12 77.4 56 66.1
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-12 77.4 56 66.1
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.8e-12 77.4 56 66.1
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.8e-12 77.4 56 66.1
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-12 77.4 90 52.2
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-12 77.4 90 52.2
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-12 77.0 55 69.1
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-12 77.0 88 51.1
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 2.3e-12 77.0 88 51.1
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-12 76.3 51 68.6
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.0e-12 76.3 55 63.6
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-12 76.3 88 50.0
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-12 76.3 88 50.0
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-12 76.3 56 66.1
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-12 76.3 56 66.1
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-12 76.3 56 66.1
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-12 76.3 56 66.1
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-12 75.9 75 56.0
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-12 75.9 86 53.5
Nn5g26837 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-12 75.9 56 67.9
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-11 74.7 87 48.3
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-11 74.7 56 62.5
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 1.2e-11 74.7 88 46.6
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 1.5e-11 74.3 56 66.1
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-11 73.6 96 49.0
CSS0032896 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-11 73.6 40 85.0
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-11 73.6 43 76.7
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 3.4e-11 73.2 51 70.6
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 5.7e-11 72.4 54 63.0
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-11 72.4 56 58.9
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.7e-11 72.4 54 64.8
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.5e-11 72.0 43 79.1
Ciclev10013585m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.3e-10 71.2 57 61.4
Manes.08G103711 Manihot esculenta HOM05D000002 ORTHO05D000001 1.7e-10 70.9 60 56.7
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-10 70.5 54 61.1
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-10 70.1 63 57.1
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.8e-10 70.1 42 76.2
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.8e-10 70.1 42 81.0
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.7e-10 69.7 56 62.5
Sopen10g012380 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-10 69.7 56 62.5
CSS0014796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-10 69.3 64 51.6
Sopen07g012350 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-10 69.3 64 59.4
Nn6g34150 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.3e-10 68.9 39 79.5
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.3e-10 68.6 80 56.2
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-09 68.2 53 60.4
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 68.2 51 62.7
CSS0016553 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-09 67.8 43 76.7
CSS0024524 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-09 67.8 43 76.7
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.8 56 55.4
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.8 89 50.6
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.8 86 51.2
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 1.8e-09 67.4 75 46.7
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 51 62.7
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 51 62.7
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 51 62.7
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 51 62.7
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 51 62.7
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.4 151 37.1
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 3.1e-09 66.6 110 40.9
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-09 66.6 49 67.3
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-09 66.2 54 55.6
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-09 66.2 63 52.4
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.1e-09 66.2 44 72.7
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-09 65.9 47 63.8
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 5.4e-09 65.9 51 62.7
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-09 65.9 73 50.7
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-09 65.5 44 72.7
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 7.0e-09 65.5 48 64.6
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.1e-09 65.1 81 50.6
Ciclev10024469m.g Citrus clementina HOM05D000002 ORTHO05D000001 9.1e-09 65.1 43 69.8
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 9.1e-09 65.1 59 54.2
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 9.1e-09 65.1 63 54.0
Sopen12g017790 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-08 64.7 51 60.8
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-08 64.3 51 58.8
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-08 64.3 51 60.8
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-08 63.9 54 53.7
ECA248G1474 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-08 63.9 80 40.0
CSS0022948 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-08 63.2 49 65.3
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 3.5e-08 63.2 53 56.6
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 3.5e-08 63.2 124 33.9
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 4.5e-08 62.8 47 61.7
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.5e-08 62.8 54 53.7
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.5e-08 62.8 63 47.6
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.9e-08 62.4 103 35.9
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-08 62.0 87 42.5
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-08 62.0 87 42.5
CSS0015826 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-07 61.6 45 71.1
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-07 61.6 82 39.0
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-07 61.2 38 68.4
Sopen02g009840 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-07 60.8 56 48.2
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-07 60.8 56 48.2
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-07 60.8 56 48.2
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 1.7e-07 60.8 60 48.3
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-07 60.8 56 48.2
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-07 59.7 48 56.2
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 5.0e-07 59.3 55 52.7
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.0e-07 59.3 52 55.8
CsaV3_3G020870 Cucumis sativus L. HOM05D000002 ORTHO05D000001 6.5e-07 58.9 39 66.7
ECA246G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.5e-07 58.9 47 57.4
MSTRG.3250 Avicennia marina HOM05D000002 ORTHO05D000001 8.5e-07 58.5 60 53.3
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-07 58.5 87 35.6
Sopen01g007590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-06 58.2 56 46.4
ECA248G1333 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 57.8 130 30.0
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 1.5e-06 57.8 63 49.2
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 1.5e-06 57.8 63 49.2
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-06 57.0 54 48.1
PSO170G4322 Papaver somniferum HOM05D000002 ORTHO05D000001 4.2e-06 56.2 38 63.2
ECA234G3983 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.5e-06 55.8 54 44.4
FvH4_3g45132 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-06 55.8 91 38.5
TPR.G7229 Trifolium pratense HOM05D000002 ORTHO05D000001 5.5e-06 55.8 49 53.1
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.2e-06 55.5 85 43.5
EL10Ac9g20778 Beta vulgaris HOM05D000002 ORTHO05D000001 9.4e-06 55.1 99 40.4
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-06 55.1 85 38.8
Medtr1g056260 Medicago truncatula HOM05D000002 ORTHO05D000001 9.4e-06 55.1 83 42.2


User provided reference genes

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