Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018128 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 9.9e-61 236.5 112 100.0
CSS0040997 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.1e-38 163.3 77 97.4
CSS0003674 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.0e-36 156.8 76 96.1
CSS0037197 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 6.1e-34 147.5 103 71.8
CSS0038370 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 6.1e-34 147.5 103 71.8
CSS0001028 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.1e-32 143.3 78 88.5
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.0e-32 142.5 119 62.2
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 4.4e-32 141.4 100 70.0
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 4.4e-32 141.4 118 63.6
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 4.4e-32 141.4 101 70.3
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 5.7e-32 141.0 100 70.0
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 5.7e-32 141.0 121 62.0
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 7.4e-32 140.6 120 63.3
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 7.4e-32 140.6 120 62.5
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 9.7e-32 140.2 101 67.3
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 9.7e-32 140.2 119 62.2
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 1.3e-31 139.8 100 69.0
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 1.3e-31 139.8 100 69.0
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 1.3e-31 139.8 100 69.0
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 1.7e-31 139.4 100 68.0
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 1.7e-31 139.4 100 68.0
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 2.2e-31 139.0 135 57.8
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.2e-31 139.0 101 68.3
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 2.2e-31 139.0 119 62.2
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 2.2e-31 139.0 120 62.5
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 2.2e-31 139.0 100 67.0
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 2.2e-31 139.0 120 61.7
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 2.8e-31 138.7 100 69.0
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.8e-31 138.7 120 62.5
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.8e-31 138.7 120 63.3
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.8e-31 138.7 120 63.3
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 2.8e-31 138.7 100 68.0
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 2.8e-31 138.7 120 60.8
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 3.7e-31 138.3 100 69.0
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 4.8e-31 137.9 100 67.0
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 8.2e-31 137.1 120 61.7
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 8.2e-31 137.1 101 65.3
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 8.2e-31 137.1 100 67.0
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 8.2e-31 137.1 100 67.0
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 8.2e-31 137.1 100 68.0
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 1.1e-30 136.7 100 67.0
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 1.1e-30 136.7 100 68.0
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 1.1e-30 136.7 100 67.0
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 1.1e-30 136.7 100 67.0
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 1.4e-30 136.3 101 66.3
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 1.4e-30 136.3 120 61.7
Sed0027108 Sechium edule HOM05D004000 ORTHO05D004629 1.4e-30 136.3 100 67.0
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 1.8e-30 136.0 121 62.0
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 1.8e-30 136.0 121 62.0
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 1.8e-30 136.0 101 65.3
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 1.8e-30 136.0 120 61.7
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 1.8e-30 136.0 120 61.7
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 2.4e-30 135.6 135 56.3
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 2.4e-30 135.6 100 69.0
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 2.4e-30 135.6 100 69.0
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 3.1e-30 135.2 120 61.7
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 4.1e-30 134.8 120 60.8
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 4.1e-30 134.8 100 67.0
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 4.1e-30 134.8 120 61.7
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 5.3e-30 134.4 100 66.0
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 6.9e-30 134.0 100 66.0
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 6.9e-30 134.0 118 59.3
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 6.9e-30 134.0 120 60.0
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 9.1e-30 133.7 100 66.0
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 9.1e-30 133.7 135 55.6
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 1.2e-29 133.3 100 67.0
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 1.2e-29 133.3 101 63.4
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 1.5e-29 132.9 100 64.0
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 2.0e-29 132.5 120 60.8
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 3.4e-29 131.7 100 64.0
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 3.4e-29 131.7 100 64.0
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 3.4e-29 131.7 100 64.0
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 3.4e-29 131.7 100 65.0
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 3.4e-29 131.7 135 54.8
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 4.5e-29 131.3 100 65.0
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 4.5e-29 131.3 100 64.0
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 4.5e-29 131.3 100 65.0
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 4.5e-29 131.3 100 64.0
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 5.9e-29 131.0 100 64.0
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 7.7e-29 130.6 100 64.0
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.0e-28 130.2 100 63.0
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.0e-28 130.2 100 63.0
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.0e-28 130.2 100 63.0
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 1.3e-28 129.8 134 51.5
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 1.3e-28 129.8 100 65.0
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 1.3e-28 129.8 101 60.4
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 1.7e-28 129.4 102 61.8
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 1.7e-28 129.4 100 66.0
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 1.7e-28 129.4 100 65.0
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 1.7e-28 129.4 100 61.0
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 2.2e-28 129.0 101 62.4
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 2.2e-28 129.0 100 63.0
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 6.5e-28 127.5 101 60.4
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 6.5e-28 127.5 101 60.4
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 59.4
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 60.4
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 60.4
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 60.4
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 60.4
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 1.4e-27 126.3 101 60.4
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 1.4e-27 126.3 119 56.3
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 1.4e-27 126.3 100 61.0
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.4e-27 126.3 100 62.0
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 1.9e-27 125.9 101 58.4
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 2.5e-27 125.6 101 59.4
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 2.5e-27 125.6 94 67.0
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 3.2e-27 125.2 101 59.4
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 3.2e-27 125.2 101 58.4
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 3.2e-27 125.2 101 59.4
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 3.2e-27 125.2 101 58.4
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 4.2e-27 124.8 101 60.4
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 4.2e-27 124.8 106 61.3
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 4.2e-27 124.8 100 59.0
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 4.2e-27 124.8 100 59.0
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 4.2e-27 124.8 100 59.0
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 5.5e-27 124.4 111 55.9
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 5.5e-27 124.4 101 58.4
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 7.2e-27 124.0 101 59.4
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 7.2e-27 124.0 118 53.4
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 7.2e-27 124.0 101 60.4
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 9.4e-27 123.6 90 65.6
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 1.6e-26 122.9 101 59.4
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 2.1e-26 122.5 100 59.0
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 2.1e-26 122.5 101 57.4
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 2.1e-26 122.5 123 54.5
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 2.7e-26 122.1 103 57.3
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 2.7e-26 122.1 100 59.0
Pp3c3_33500 Physcomitrium patens HOM05D004000 ORTHO05D004629 8.0e-26 120.6 100 63.0
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 1.0e-25 120.2 100 58.0
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 1.0e-25 120.2 122 54.9
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 1.4e-25 119.8 101 57.4
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.4e-25 119.8 100 58.0
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 1.8e-25 119.4 120 57.5
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.8e-25 119.4 100 57.0
ATR0605G256 Amborella trichopoda HOM05D004000 ORTHO05D004629 2.2e-23 112.5 89 62.9
RcHm_v2.0_Chr2g0106621 Rosa chinensis HOM05D004000 ORTHO05D004629 2.2e-23 112.5 102 54.9
Gorai.009G353900 Gossypium raimondii HOM05D004000 ORTHO05D004629 2.8e-23 112.1 100 54.0
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 1.4e-22 109.8 100 52.0
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 1.8e-22 109.4 100 51.0
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.4e-22 109.0 102 54.9
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 2.4e-22 109.0 102 54.9
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.4e-22 109.0 102 54.9
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 3.1e-22 108.6 100 51.0
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 7.0e-22 107.5 51 92.2
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 2.0e-21 105.9 102 53.9
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 5.9e-21 104.4 102 52.9
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 1.0e-20 103.6 100 48.0
BcaC01g04032 Brassica carinata HOM05D004000 ORTHO05D004629 3.8e-20 101.7 66 68.2
Cre12.g487400 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 1.2e-16 90.1 101 45.5
SMO198G0075 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 7.5e-16 87.4 50 72.0
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.1e-14 83.6 93 52.7
Cre01.g014850 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 3.8e-12 75.1 105 37.1
SEGI_20471 Sequoiadendron giganteum HOM05D004000 ORTHO05D004629 6.5e-12 74.3 35 91.4
AUR62037658 Chenopodium quinoa HOM05D004000 ORTHO05D004629 8.5e-12 73.9 35 85.7
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 8.5e-12 73.9 35 85.7
Gohir.D05G330150 Gossypium hirsutum HOM05D004000 ORTHO05D004629 3.2e-11 72.0 78 47.4
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 7.2e-11 70.9 97 43.3
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 3.0e-09 65.5 66 53.0
PRCOL_00005347 Prasinoderma coloniale HOM05D004000 ORTHO05D004629 3.0e-09 65.5 101 34.7
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 4.4e-08 61.6 66 48.5
CAN.G106.17 Capsicum annuum HOM05D004000 ORTHO05D000001 1.7e-07 59.7 39 61.5


User provided reference genes

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