Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 4.6e-275 950.7 499 100.0
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 2.4e-271 938.3 499 99.2
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 1.3e-221 773.1 504 81.3
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 5.2e-218 761.1 504 80.2
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 9.1e-215 750.4 528 76.7
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 3.6e-179 632.1 495 66.9
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 6.2e-179 631.3 496 66.3
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 6.2e-179 631.3 510 68.2
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 1.4e-178 630.2 517 68.5
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 1.4e-178 630.2 495 69.9
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 3.1e-178 629.0 497 67.4
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 4.4e-177 625.2 455 71.0
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 9.9e-177 624.0 503 66.0
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 2.9e-176 622.5 466 70.8
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 8.3e-176 620.9 500 66.8
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 5.4e-175 618.2 498 65.1
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 9.2e-175 617.5 444 75.2
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 1.2e-174 617.1 494 65.6
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 1.0e-173 614.0 503 67.6
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.3e-173 613.6 497 66.4
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 2.3e-173 612.8 498 66.1
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 3.9e-173 612.1 495 67.1
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 1.9e-172 609.8 493 64.7
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 2.5e-172 609.4 495 65.9
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 7.3e-172 607.8 496 65.3
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 6.2e-171 604.7 498 64.7
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 1.1e-170 604.0 493 66.1
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.8e-170 603.2 497 65.0
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 3.1e-170 602.4 454 70.3
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 3.1e-170 602.4 501 64.1
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 6.8e-170 601.3 483 67.3
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 6.8e-170 601.3 508 67.7
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 6.8e-170 601.3 494 65.6
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.5e-169 600.1 502 65.3
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.0e-169 599.7 515 63.1
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 3.4e-169 599.0 493 65.1
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 5.8e-169 598.2 501 65.9
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 7.6e-169 597.8 522 63.2
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 7.6e-169 597.8 512 64.3
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 1.3e-168 597.0 501 65.1
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 1.7e-168 596.7 500 64.0
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 1.7e-168 596.7 496 64.1
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.4e-167 593.6 516 62.4
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 1.4e-167 593.6 505 63.0
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 2.7e-166 589.3 494 63.8
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 5.1e-165 585.1 498 65.7
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 6.6e-165 584.7 501 62.7
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 1.9e-164 583.2 499 62.3
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 2.5e-164 582.8 498 64.7
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 5.6e-164 581.6 533 60.0
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 7.3e-164 581.3 475 65.1
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 7.3e-164 581.3 514 63.0
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 9.6e-164 580.9 500 63.0
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 9.6e-164 580.9 496 62.3
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 2.1e-163 579.7 452 68.6
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 6.2e-163 578.2 499 64.3
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.0e-161 573.2 552 57.8
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 4.4e-161 572.0 503 62.2
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 1.1e-159 567.4 499 62.1
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 5.4e-159 565.1 447 69.4
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 5.4e-159 565.1 492 63.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 8.7e-157 557.8 493 61.9
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 1.6e-155 553.5 457 64.8
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 1.4e-154 550.4 495 61.0
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.4e-154 550.4 498 62.2
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 1.4e-154 550.4 492 62.0
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 2.4e-154 549.7 495 61.0
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 1.2e-153 547.4 495 60.6
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 1.2e-153 547.4 499 60.7
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 2.6e-153 546.2 494 60.7
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 4.5e-153 545.4 495 60.6
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 4.5e-153 545.4 447 64.9
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.2e-152 543.1 474 62.2
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 6.4e-152 541.6 492 61.0
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 1.4e-151 540.4 439 67.9
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 5.4e-151 538.5 415 66.3
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 1.9e-148 530.0 445 63.8
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 2.5e-148 529.6 448 63.2
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 3.7e-147 525.8 345 78.6
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.5e-145 520.4 436 63.5
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 3.8e-144 515.8 372 73.4
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 9.3e-143 511.1 492 59.8
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.1e-142 510.0 418 66.5
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 3.2e-127 459.5 497 55.1
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 1.6e-126 457.2 347 66.9
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 1.1e-116 424.5 330 69.7
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 8.5e-112 408.3 301 68.4
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 2.0e-108 397.1 340 63.5
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 1.1e-106 391.3 342 63.5
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 5.5e-103 379.0 290 67.9
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 2.2e-99 367.1 344 54.7
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 5.0e-96 355.9 333 57.7
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.3e-93 347.1 497 40.8
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 7.5e-92 342.0 511 40.1
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 4.9e-91 339.3 282 63.5
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 1.4e-85 321.2 289 62.3
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 8.9e-85 318.5 259 63.3
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 1.3e-83 314.7 289 60.6
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 1.7e-83 314.3 267 65.5
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 2.2e-83 313.9 265 63.8
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 8.3e-83 312.0 253 66.0
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 6.8e-77 292.4 233 66.1
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.2e-76 291.6 238 64.7
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.8e-61 241.1 211 62.1
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 4.0e-37 160.2 352 36.6
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 7.9e-33 146.0 148 60.8
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 7.9e-33 146.0 148 60.8
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 1.3e-30 138.7 119 61.3
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 2.2e-27 127.9 287 30.3
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 6.5e-27 126.3 345 29.9
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 7.9e-25 119.4 76 77.6
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.3e-24 118.6 308 28.9
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 1.3e-24 118.6 76 75.0
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 2.5e-23 114.4 145 55.2
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.4e-21 108.6 108 54.6
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 2.4e-21 107.8 103 54.4
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 5.9e-20 103.2 103 53.4
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 6.5e-19 99.8 61 85.2
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 2.1e-17 94.7 99 55.6
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 4.6e-17 93.6 88 59.1
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.3e-16 91.3 88 58.0
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 8.2e-14 82.8 48 81.2
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 2.0e-12 78.2 84 47.6
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 2.1e-09 68.2 41 78.0
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 6.1e-09 66.6 47 68.1
Aa31LG4G1490 Aethionema arabicum HOM05D000870 ORTHO05D000715 1.0e-08 65.9 303 24.4
ECA236G4328 Erigeron canadensis HOM05D000870 ORTHO05D000715 2.3e-08 64.7 374 20.6
PSO675G5941 Papaver somniferum HOM05D000870 ORTHO05D000715 5.1e-08 63.5 300 21.7
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 6.7e-08 63.2 302 23.5
HanXRQChr11g0321931 Helianthus annuus HOM05D000870 ORTHO05D000715 1.1e-07 62.4 303 22.8
arahy.Tifrunner.gnm1.ann1.1E45SP Arachis hypogaea HOM05D000870 ORTHO05D000715 2.6e-07 61.2 153 27.5
arahy.Tifrunner.gnm1.ann1.3T6XNU Arachis hypogaea HOM05D000870 ORTHO05D000715 2.6e-07 61.2 153 27.5
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 2.6e-07 61.2 41 65.9
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 3.3e-07 60.8 300 22.3
Os01g0837800 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 5.7e-07 60.1 364 22.8
MSTRG.13086 Avicennia marina HOM05D000870 ORTHO05D000715 7.4e-07 59.7 301 23.3
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 7.4e-07 59.7 36 80.6
Ca_16274_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 9.7e-07 59.3 342 21.1
TAR627G0727 Trochodendron aralioides HOM05D000870 ORTHO05D000715 9.7e-07 59.3 300 21.0
MD07G1190000 Malus domestica HOM05D000870 ORTHO05D000715 1.3e-06 58.9 320 22.5
Zm00001eb148620 Zea mays HOM05D000870 ORTHO05D000715 1.3e-06 58.9 364 23.1
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 1.7e-06 58.5 321 21.5
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 1.7e-06 58.5 299 21.7
Sed0002216 Sechium edule HOM05D000870 ORTHO05D000715 1.7e-06 58.5 321 22.4
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 2.2e-06 58.2 299 22.1
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.2e-06 58.2 299 22.1
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.2e-06 58.2 299 22.1
Glyma.09G122600 Glycine max HOM05D000870 ORTHO05D000715 2.8e-06 57.8 147 27.9
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 3.7e-06 57.4 61 47.5
CANSAT56G0490 Cannabis sativa HOM05D000870 ORTHO05D000715 3.7e-06 57.4 150 28.0
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.7e-06 57.4 44 65.9
Cre03.g160750 Chlamydomonas reinhardtii HOM05D000870 ORTHO05D000715 3.7e-06 57.4 302 19.5
CsaV3_6G013480 Cucumis sativus L. HOM05D000870 ORTHO05D000715 3.7e-06 57.4 321 22.4
Psat5g111840 Pisum sativum HOM05D000870 ORTHO05D000715 4.8e-06 57.0 147 27.9
HPP92_019816 Vanilla planifolia HOM05D000870 ORTHO05D000715 4.8e-06 57.0 301 22.3
Cpa.g.sc32.72 Carica papaya HOM05D000870 ORTHO05D000715 6.3e-06 56.6 168 25.6
SEGI_29117 Sequoiadendron giganteum HOM05D002567 ORTHO05D007435 6.3e-06 56.6 106 35.8
Thecc.05G175000 Theobroma cacao HOM05D000870 ORTHO05D000715 6.3e-06 56.6 176 25.6
arahy.Tifrunner.gnm1.ann1.C1W7MD Arachis hypogaea HOM05D000870 ORTHO05D000715 8.2e-06 56.2 320 22.5
Migut.M01512 Erythranthe guttata HOM05D000870 ORTHO05D000715 8.2e-06 56.2 303 22.8
TAR633G0149 Trochodendron aralioides HOM05D000870 ORTHO05D000715 8.2e-06 56.2 299 23.1


User provided reference genes

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