Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018090 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.0e-43 178.7 90 100.0
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 1.2e-19 99.8 69 72.5
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 4.9e-18 94.4 70 65.7
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.9e-17 92.4 69 66.7
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 5.4e-17 90.9 70 68.6
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.2e-16 89.7 69 66.7
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.5e-14 82.0 67 64.2
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 5.6e-14 80.9 67 59.7
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 1.1e-12 76.6 68 61.8
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.2e-11 73.2 67 55.2
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 2.0e-11 72.4 73 53.4
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 5.8e-11 70.9 82 46.3
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 5.8e-11 70.9 69 56.5
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 7.6e-11 70.5 69 56.5
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 4.9e-10 67.8 69 55.1
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 6.4e-10 67.4 67 53.7
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 8.4e-10 67.0 82 46.3
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.9e-09 65.9 69 52.2
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 1.9e-09 65.9 76 47.4
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 3.2e-09 65.1 67 47.8
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 4.2e-09 64.7 76 40.8
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 4.2e-09 64.7 69 46.4
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 5.4e-09 64.3 66 51.5
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 9.3e-09 63.5 77 42.9
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 9.3e-09 63.5 77 46.8
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.2e-08 63.2 69 44.9
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.6e-08 62.8 66 51.5
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.6e-08 62.8 92 42.4
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 2.1e-08 62.4 77 42.9
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 2.7e-08 62.0 66 53.0
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 4.6e-08 61.2 69 53.6
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 4.6e-08 61.2 69 53.6
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 4.6e-08 61.2 68 45.6
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 6.0e-08 60.8 66 50.0
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 1.0e-07 60.1 69 47.8
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.3e-07 59.7 69 43.5
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 1.3e-07 59.7 66 50.0
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 1.3e-07 59.7 69 46.4
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 2.3e-07 58.9 69 42.0
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 3.0e-07 58.5 69 46.4
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 3.9e-07 58.2 69 44.9
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 3.9e-07 58.2 66 42.4
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 3.9e-07 58.2 66 45.5
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 5.1e-07 57.8 49 57.1
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 6.6e-07 57.4 68 44.1
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 6.6e-07 57.4 58 53.4
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 6.6e-07 57.4 67 44.8
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 1.1e-06 56.6 65 44.6
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.5e-06 56.2 67 44.8
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.9e-06 55.8 67 44.8
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 1.9e-06 55.8 65 49.2
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 2.5e-06 55.5 70 45.7
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 3.3e-06 55.1 69 44.9
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 3.3e-06 55.1 69 40.6
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 4.3e-06 54.7 78 38.5
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 5.6e-06 54.3 69 43.5
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 7.3e-06 53.9 64 48.4


User provided reference genes

Program Settings