Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018059 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.0e-74 282.3 141 100.0
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.6e-55 219.5 121 88.4
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.1e-55 219.2 121 89.3
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.7e-55 218.8 121 89.3
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 4.6e-55 218.0 121 88.4
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 6.0e-55 217.6 121 86.8
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 6.0e-55 217.6 121 86.8
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 2.3e-54 215.7 121 86.0
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 3.0e-54 215.3 121 87.6
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 3.9e-54 214.9 121 86.8
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 3.9e-54 214.9 121 86.0
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 5.1e-54 214.5 121 85.1
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 6.7e-54 214.2 121 85.1
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 6.7e-54 214.2 123 84.6
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 8.7e-54 213.8 121 86.8
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 1.5e-53 213.0 121 85.1
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 1.5e-53 213.0 121 85.1
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.5e-53 213.0 121 85.1
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 1.5e-53 213.0 121 86.8
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 1.5e-53 213.0 121 86.8
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 1.9e-53 212.6 121 85.1
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.5e-53 212.2 121 87.6
Nn1g00039 Nelumbo nucifera HOM05D004338 ORTHO05D005205 2.5e-53 212.2 122 83.6
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 2.5e-53 212.2 121 86.0
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 3.3e-53 211.8 121 86.0
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 4.3e-53 211.5 121 85.1
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 4.3e-53 211.5 121 83.5
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 7.4e-53 210.7 123 80.5
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 7.4e-53 210.7 121 82.6
Nn1g02553 Nelumbo nucifera HOM05D004338 ORTHO05D005205 9.6e-53 210.3 121 83.5
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 1.3e-52 209.9 121 82.6
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 1.6e-52 209.5 121 82.6
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 1.6e-52 209.5 121 82.6
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 1.6e-52 209.5 121 83.5
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 1.6e-52 209.5 121 82.6
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 2.1e-52 209.1 121 83.5
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 2.1e-52 209.1 121 83.5
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 2.8e-52 208.8 121 83.5
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 2.8e-52 208.8 122 83.6
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 3.6e-52 208.4 121 81.8
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 4.8e-52 208.0 121 83.5
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 4.8e-52 208.0 121 83.5
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 4.8e-52 208.0 121 81.8
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 6.2e-52 207.6 121 83.5
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 8.1e-52 207.2 121 82.6
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 8.1e-52 207.2 121 81.8
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 1.1e-51 206.8 121 82.6
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.1e-51 206.8 121 82.6
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.1e-51 206.8 121 83.5
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.4e-51 206.5 121 82.6
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 1.8e-51 206.1 121 82.6
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 2.4e-51 205.7 121 80.2
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 2.4e-51 205.7 123 80.5
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 3.1e-51 205.3 121 80.2
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 3.1e-51 205.3 121 80.2
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 3.1e-51 205.3 121 81.8
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 4.0e-51 204.9 121 79.3
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 4.0e-51 204.9 121 79.3
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 4.0e-51 204.9 121 82.6
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 4.0e-51 204.9 121 81.8
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 4.0e-51 204.9 121 81.8
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 5.3e-51 204.5 121 81.0
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 5.3e-51 204.5 121 81.8
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.3e-51 204.5 121 81.8
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 5.3e-51 204.5 121 81.8
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 9.0e-51 203.8 121 78.5
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 1.2e-50 203.4 121 81.8
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 2.6e-50 202.2 121 80.2
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 3.4e-50 201.8 121 80.2
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 4.5e-50 201.4 121 78.5
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 7.6e-50 200.7 121 79.3
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.6e-50 200.7 121 81.0
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 7.6e-50 200.7 121 81.0
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 7.6e-50 200.7 121 80.2
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.9e-50 200.3 121 80.2
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 9.9e-50 200.3 121 78.5
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 1.3e-49 199.9 121 79.3
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 1.3e-49 199.9 123 75.6
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 1.7e-49 199.5 121 79.3
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 1.7e-49 199.5 121 79.3
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 3.8e-49 198.4 121 79.3
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 8.4e-49 197.2 121 77.7
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 1.1e-48 196.8 121 78.5
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 1.1e-48 196.8 121 78.5
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.9e-48 196.1 121 78.5
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 77.7
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 77.7
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 77.7
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 77.7
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 77.7
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 2.4e-48 195.7 121 76.0
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 4.2e-48 194.9 121 78.5
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 4.2e-48 194.9 121 77.7
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 5.5e-48 194.5 121 77.7
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 9.3e-48 193.7 121 77.7
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 9.3e-48 193.7 121 77.7
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.6e-47 193.0 121 76.0
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 1.6e-47 193.0 121 75.2
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 2.1e-47 192.6 121 76.0
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 2.7e-47 192.2 121 77.7
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 2.7e-47 192.2 123 75.6
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 4.6e-47 191.4 121 76.0
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 7.9e-47 190.7 121 76.0
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 6.7e-46 187.6 121 74.4
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.1e-45 186.8 121 74.4
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 4.8e-44 181.4 121 73.6
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 6.2e-44 181.0 121 71.1
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 8.1e-44 180.6 121 69.4
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 1.4e-43 179.9 121 68.6
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.4e-43 179.1 121 70.2
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.4e-43 179.1 121 72.7
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 3.1e-43 178.7 121 71.1
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 5.3e-43 177.9 121 67.8
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 6.9e-43 177.6 121 69.4
CARHR210350 Cardamine hirsuta HOM05D004338 ORTHO05D005205 6.9e-43 177.6 121 68.6
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.8e-41 171.8 125 69.6
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 3.8e-41 171.8 122 73.0
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.7e-36 155.2 95 77.9
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 2.3e-30 136.0 124 50.0
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 4.3e-29 131.7 87 77.0
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 8.2e-28 127.5 84 66.7
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 4.5e-26 121.7 124 46.0
SEGI_27587 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 2.9e-25 119.0 122 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 2.5e-24 115.9 123 47.2
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 2.0e-21 106.3 123 42.3
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 4.8e-20 101.7 121 49.6
Nitab4.5_0000525g0110 Nicotiana tabacum HOM05D004338 ORTHO05D005205 6.3e-20 101.3 60 81.7
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 2.4e-19 99.4 60 76.7
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 2.4e-19 99.4 100 47.0
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 3.4e-18 95.5 80 62.5
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 2.0e-13 79.7 52 67.3
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 3.8e-09 65.5 35 85.7


User provided reference genes

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