Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 8.4e-291 1003.0 539 100.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.6e-257 892.5 533 87.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 5.2e-256 887.5 539 85.3
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.4e-248 862.8 539 81.3
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.5e-247 859.4 538 81.0
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-245 852.8 543 80.5
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 4.5e-244 847.8 541 81.3
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 7.7e-244 847.0 543 79.9
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 8.6e-243 843.6 509 84.7
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 2.5e-242 842.0 548 79.4
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.5e-242 842.0 503 84.7
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 5.5e-242 840.9 501 85.2
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.2e-242 840.5 511 83.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 1.2e-241 839.7 539 85.3
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.2e-241 839.7 500 85.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.6e-241 839.3 502 83.7
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.1e-241 839.0 539 78.8
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.8e-241 838.6 500 84.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 3.6e-241 838.2 540 81.1
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 6.1e-241 837.4 552 78.8
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 4.4e-239 831.2 540 79.4
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 4.4e-239 831.2 539 77.9
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 5.7e-239 830.9 539 78.8
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 7.5e-239 830.5 539 78.3
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 8.3e-238 827.0 540 78.9
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 8.3e-238 827.0 506 84.2
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 8.3e-238 827.0 504 82.7
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.1e-237 826.6 504 82.7
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.8e-237 825.9 551 78.9
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.8e-237 825.9 630 72.4
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 2.4e-237 825.5 501 83.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 2.4e-237 825.5 538 78.4
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 3.1e-237 825.1 504 82.5
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 7.0e-237 823.9 539 78.3
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.5e-236 821.6 526 79.5
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.5e-236 821.2 538 83.3
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 5.9e-236 820.8 541 78.6
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.9e-236 820.8 503 82.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 2.3e-235 818.9 541 78.6
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.9e-235 818.5 539 79.2
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 5.0e-235 817.8 539 77.7
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 8.6e-235 817.0 533 78.2
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.1e-234 816.6 508 82.9
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.5e-234 815.5 531 79.5
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 4.3e-234 814.7 501 82.6
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.6e-233 812.8 535 78.3
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.4e-232 809.7 546 77.8
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 8.9e-232 807.0 502 79.9
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.5e-231 806.2 501 80.6
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.6e-231 805.4 505 81.2
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.2e-228 796.6 501 81.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 7.8e-228 793.9 508 79.7
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 3.9e-227 791.6 499 80.6
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 5.6e-226 787.7 502 79.7
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 9.5e-226 786.9 542 75.5
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.2e-225 786.6 499 78.8
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 3.6e-225 785.0 541 75.2
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.8e-224 782.7 502 80.7
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 8.9e-224 780.4 503 78.9
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.2e-223 780.0 516 77.3
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.2e-223 780.0 554 73.3
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.2e-223 780.0 554 72.6
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.5e-223 779.6 503 79.3
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.4e-223 778.5 541 75.6
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.7e-222 776.2 506 78.3
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.6e-220 769.6 507 78.1
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.6e-220 769.6 506 78.9
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.1e-220 769.2 608 68.8
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.6e-220 768.1 502 78.5
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 4.6e-220 768.1 539 74.4
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.3e-219 766.5 503 79.3
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.9e-219 765.0 503 77.9
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.3e-218 761.9 540 73.9
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 4.3e-218 761.5 525 76.0
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.3e-218 761.5 503 77.9
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.3e-218 761.5 502 77.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.3e-218 761.5 502 77.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.8e-217 758.8 513 76.6
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.4e-216 756.5 519 75.7
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.8e-216 756.1 509 78.4
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 6.4e-214 747.7 501 76.2
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 4.3e-210 734.9 485 78.1
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.4e-208 729.9 554 69.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.2e-205 718.4 425 88.2
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 6.0e-204 714.5 595 66.4
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.9e-200 701.0 503 73.2
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 9.9e-199 697.2 472 76.5
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.3e-198 696.8 507 72.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 5.1e-195 684.9 559 66.4
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 7.3e-194 681.0 487 70.6
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.8e-193 679.1 500 69.4
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 8.4e-190 667.5 506 67.0
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.1e-185 652.9 433 78.1
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-178 630.2 495 64.4
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-178 630.2 495 64.4
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 4.9e-174 615.1 433 75.1
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.2e-172 610.5 444 69.1
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.9e-165 586.6 369 78.6
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 2.0e-162 576.6 517 57.6
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.8e-158 562.4 487 59.5
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 8.5e-158 561.2 365 78.6
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.6e-154 549.7 361 78.7
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 9.1e-152 541.2 358 76.5
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 2.2e-150 536.6 328 82.9
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 4.4e-138 495.7 321 78.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 4.1e-120 436.0 457 57.8
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.8e-116 423.3 255 80.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.7e-116 422.5 255 80.4
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 2.5e-109 400.2 507 46.0
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 4.1e-104 382.9 486 45.5
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 3.3e-101 373.2 240 77.9
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.4e-88 330.5 490 41.2
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 5.4e-80 302.8 338 53.0
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 4.6e-79 299.7 173 85.0
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 7.4e-53 212.6 199 59.8
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-52 210.3 500 34.8
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 4.1e-51 206.8 478 36.0
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 2.6e-50 204.1 118 86.4
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.4e-48 198.4 506 33.6
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-39 166.8 290 40.0
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.4e-38 165.2 115 74.8
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-36 158.3 468 32.9
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 8.2e-36 156.0 490 32.0
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.1e-35 153.7 447 31.8
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 8.0e-31 139.4 293 37.5
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-30 138.7 277 39.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.4e-29 133.7 86 73.3
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-28 131.3 331 35.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-28 129.8 302 33.8
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-25 120.2 236 39.0
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-24 119.0 208 39.9
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 6.1e-23 113.2 352 31.8
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.4e-22 112.1 275 30.9
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.2e-22 110.2 156 42.3
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 8.8e-22 109.4 359 31.8
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-21 107.5 208 39.4
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 9.8e-21 105.9 396 31.3
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-20 105.1 156 41.0
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.7e-20 105.1 74 67.6
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.8e-20 104.4 57 84.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-20 104.0 208 38.9
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 6.3e-20 103.2 395 31.6
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 5.4e-19 100.1 239 31.8
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 1.2e-18 99.0 306 29.1
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.6e-15 88.6 327 30.0
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.4e-13 80.9 288 31.2
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-09 69.3 177 34.5
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 6.8e-06 56.6 48 62.5
Pp3c24_2440 Physcomitrium patens HOM05D004787 ORTHO05D313483 6.8e-06 56.6 75 44.0
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 8.9e-06 56.2 45 64.4


User provided reference genes

Program Settings