Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.8e-116 421.8 254 100.0
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-113 413.3 254 95.3
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-113 413.3 254 95.3
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 3.2e-107 392.1 254 88.2
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.7e-105 384.4 254 88.2
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.4e-97 360.1 254 80.3
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.2e-91 339.0 254 77.2
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 9.4e-83 310.8 254 75.6
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-76 290.4 254 76.8
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 5.4e-22 109.0 62 87.1
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 2.8e-18 96.7 66 80.3
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.1e-18 95.1 91 58.2
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.4e-17 94.4 65 80.0
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.2e-16 91.3 55 85.5
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-16 90.9 55 81.8
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 2.6e-16 90.1 55 83.6
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 7.6e-16 88.6 65 75.4
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.7e-15 87.4 65 73.8
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 2.9e-15 86.7 62 79.0
CSS0007594 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 3.8e-15 86.3 81 55.6
CSS0013279 Camellia sinensis var. sinensis HOM05D038181 ORTHO05D033864 3.8e-15 86.3 81 55.6
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 6.4e-15 85.5 66 72.7
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 6.4e-15 85.5 66 72.7
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 6.4e-15 85.5 66 72.7
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.1e-14 84.7 65 75.4
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.4e-14 84.3 65 73.8
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.4e-14 84.3 67 74.6
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.9e-14 84.0 66 71.2
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.9e-14 84.0 66 71.2
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.9e-14 84.0 66 71.2
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.9e-14 84.0 59 76.3
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 2.4e-14 83.6 66 74.2
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 2.4e-14 83.6 57 75.4
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 3.2e-14 83.2 66 68.2
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.2e-14 83.2 66 72.7
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 3.2e-14 83.2 66 71.2
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 3.2e-14 83.2 108 48.1
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 4.2e-14 82.8 89 53.9
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 7.1e-14 82.0 66 72.7
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.1e-14 82.0 66 71.2
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 7.1e-14 82.0 66 71.2
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 7.1e-14 82.0 87 57.5
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 9.3e-14 81.6 66 71.2
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 9.3e-14 81.6 65 72.3
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 9.3e-14 81.6 69 73.9
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 9.3e-14 81.6 69 73.9
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 9.3e-14 81.6 55 78.2
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 1.2e-13 81.3 55 80.0
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.6e-13 80.9 67 68.7
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.6e-13 80.9 66 71.2
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 1.6e-13 80.9 55 70.9
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 2.1e-13 80.5 64 71.9
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 2.1e-13 80.5 85 51.8
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.1e-13 80.5 65 69.2
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 2.1e-13 80.5 62 72.6
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 2.7e-13 80.1 56 69.6
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 3.5e-13 79.7 93 52.7
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.5e-13 79.7 56 78.6
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.5e-13 79.7 56 78.6
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.5e-13 79.7 56 78.6
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.5e-13 79.7 93 52.7
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.5e-13 79.7 65 70.8
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 4.6e-13 79.3 55 70.9
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 4.6e-13 79.3 70 65.7
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 4.6e-13 79.3 91 56.0
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 6.0e-13 79.0 54 74.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 7.9e-13 78.6 61 73.8
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 7.9e-13 78.6 55 69.1
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 7.9e-13 78.6 57 75.4
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 7.9e-13 78.6 55 80.0
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 7.9e-13 78.6 55 74.5
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 7.9e-13 78.6 65 67.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 7.9e-13 78.6 54 72.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 1.0e-12 78.2 55 69.1
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 1.3e-12 77.8 67 62.7
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.3e-12 77.8 56 80.4
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.3e-12 77.8 55 69.1
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 1.3e-12 77.8 55 72.7
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 1.3e-12 77.8 63 63.5
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 1.3e-12 77.8 65 72.3
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 1.8e-12 77.4 55 69.1
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.8e-12 77.4 67 65.7
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 1.8e-12 77.4 63 73.0
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 2.3e-12 77.0 66 72.7
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.3e-12 77.0 65 67.7
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.3e-12 77.0 58 74.1
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 2.3e-12 77.0 56 76.8
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 3.0e-12 76.6 70 65.7
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 3.0e-12 76.6 65 69.2
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.9e-12 76.3 67 64.2
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 3.9e-12 76.3 72 63.9
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.1e-12 75.9 95 52.6
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.1e-12 75.9 56 71.4
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 5.1e-12 75.9 55 76.4
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 6.7e-12 75.5 68 66.2
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 6.7e-12 75.5 85 49.4
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 6.7e-12 75.5 89 52.8
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 8.7e-12 75.1 95 51.6
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 8.7e-12 75.1 95 51.6
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.1e-11 74.7 63 60.3
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.5e-11 74.3 64 71.9
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.5e-11 74.3 59 64.4
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.5e-11 74.3 65 69.2
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.9e-11 73.9 59 69.5
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.9e-11 73.9 59 69.5
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.9e-11 73.9 73 60.3
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 2.5e-11 73.6 54 72.2
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 2.5e-11 73.6 61 65.6
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 4.3e-11 72.8 55 65.5
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 4.3e-11 72.8 55 65.5
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 5.6e-11 72.4 54 75.9
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 7.4e-11 72.0 55 63.6
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 7.4e-11 72.0 56 69.6
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.6e-10 70.9 61 63.9
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.6e-10 70.9 61 65.6
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 1.6e-10 70.9 56 69.6
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.6e-10 70.9 56 69.6
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 2.1e-10 70.5 89 50.6
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 2.8e-10 70.1 62 62.9
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 8.1e-10 68.6 64 60.9
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 1.1e-09 68.2 56 67.9
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.1e-09 68.2 57 63.2
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.4e-09 67.8 71 57.7
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.8e-09 67.4 43 83.7
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 2.4e-09 67.0 54 63.0
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 4.0e-09 66.2 57 61.4
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 5.3e-09 65.9 56 62.5
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 6.9e-09 65.5 68 58.8
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 9.0e-09 65.1 63 57.1
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 9.0e-09 65.1 57 59.6
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.2e-08 64.7 66 60.6
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 2.0e-08 63.9 56 60.7
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.4e-08 63.2 73 54.8
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 4.5e-08 62.8 57 59.6
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 5.8e-08 62.4 58 62.1
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 5.8e-08 62.4 89 44.9
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 7.6e-08 62.0 59 57.6
CiPaw.01G035600 Carya illinoinensis HOM05D000401 ORTHO05D000252 7.6e-08 62.0 131 35.9
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 9.9e-08 61.6 56 60.7
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 1.3e-07 61.2 92 44.6
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-07 60.8 57 68.4
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.7e-07 60.8 57 68.4
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 2.9e-07 60.1 64 54.7
Dinv39966 Davidia involucrata HOM05D038181 ORTHO05D000252 2.9e-07 60.1 124 38.7
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.8e-07 59.7 47 72.3
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 4.9e-07 59.3 79 53.2
TAR628G1031 Trochodendron aralioides HOM05D000401 ORTHO05D000252 4.9e-07 59.3 137 33.6
TAR628G1738 Trochodendron aralioides HOM05D000401 ORTHO05D000252 4.9e-07 59.3 137 33.6
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 8.4e-07 58.5 61 54.1
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 1.4e-06 57.8 100 43.0
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 3.2e-06 56.6 42 73.8
FvH4_1g13640 Fragaria vesca HOM05D000401 ORTHO05D000252 5.5e-06 55.8 123 38.2
FAN19G2628 Fragaria x ananassa HOM05D000401 ORTHO05D000252 5.5e-06 55.8 123 38.2
FAN26G0682 Fragaria x ananassa HOM05D000401 ORTHO05D000252 5.5e-06 55.8 123 38.2
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 5.5e-06 55.8 74 51.4
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 5.5e-06 55.8 58 60.3
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 9.3e-06 55.1 61 55.7


User provided reference genes

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