Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017992 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D022131 2.5e-30 134.8 68 100.0
Actinidia31995 Actinidia chinensis HOM05D002601 ORTHO05D002884 9.4e-14 79.7 54 74.1
vmacro01417 Vaccinium macrocarpon HOM05D002601 ORTHO05D022131 9.4e-14 79.7 55 72.7
Lj1A9T42 Lonicera japonica HOM05D002601 ORTHO05D002884 6.1e-13 77.0 54 70.4
Rhsim12G0087500 Rhododendron simsii HOM05D002601 ORTHO05D002884 1.0e-12 76.3 54 70.4
Cc10_g11970 Coffea canephora HOM05D002601 ORTHO05D002884 2.3e-12 75.1 54 70.4
Thecc.01G323900 Theobroma cacao HOM05D002601 ORTHO05D002884 6.8e-12 73.6 54 68.5
Duzib138G1823 Durio zibethinus HOM05D002601 ORTHO05D002884 1.2e-11 72.8 54 68.5
Cpa.g.sc41.90 Carica papaya HOM05D002601 ORTHO05D002884 1.5e-11 72.4 54 68.5
Cfa004893 Carpinus fangiana HOM05D002601 ORTHO05D002884 2.0e-11 72.0 54 68.5
COL.COLO4_23144 Corchorus olitorius HOM05D002601 ORTHO05D002884 2.0e-11 72.0 54 68.5
Haze_05132 Corylus avellana HOM05D002601 ORTHO05D002884 2.0e-11 72.0 54 68.5
QL12p034519 Quercus lobata HOM05D002601 ORTHO05D002884 3.4e-11 71.2 54 66.7
TPR.G2423 Trifolium pratense HOM05D002601 ORTHO05D022131 4.4e-11 70.9 57 61.4
Medtr7g110570 Medicago truncatula HOM05D002601 ORTHO05D002884 7.5e-11 70.1 54 63.0
Ciclev10020151m.g Citrus clementina HOM05D002601 ORTHO05D002884 9.8e-11 69.7 54 66.7
Gorai.007G116300 Gossypium raimondii HOM05D002601 ORTHO05D002884 9.8e-11 69.7 54 63.0
Lsat_1_v5_gn_8_167200 Lactuca sativa HOM05D002601 ORTHO05D002884 9.8e-11 69.7 54 64.8
Oeu038072.1 Olea europaea HOM05D002601 ORTHO05D002884 1.3e-10 69.3 54 61.1
PSO170G2438 Papaver somniferum HOM05D002601 ORTHO05D002884 1.3e-10 69.3 54 64.8
PSO357G0226 Papaver somniferum HOM05D002601 ORTHO05D002884 1.3e-10 69.3 54 64.8
Phvul.001G217500 Phaseolus vulgaris HOM05D002601 ORTHO05D002884 1.3e-10 69.3 54 61.1
CiPaw.07G124400 Carya illinoinensis HOM05D002601 ORTHO05D002884 1.7e-10 68.9 54 63.0
Lj1g0008552 Lotus japonicus HOM05D002601 ORTHO05D002884 2.2e-10 68.6 54 61.1
MBI19_g32739_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 2.2e-10 68.6 54 63.0
Nn3g21920 Nelumbo nucifera HOM05D002601 ORTHO05D002884 2.2e-10 68.6 54 63.0
VMungo1383G1635 Vigna mungo HOM05D002601 ORTHO05D002884 2.2e-10 68.6 54 63.0
Gohir.D11G108700 Gossypium hirsutum HOM05D002601 ORTHO05D002884 2.8e-10 68.2 54 61.1
MBI19_g48072_MAGBIO Magnolia biondii HOM05D002601 ORTHO05D002884 2.8e-10 68.2 54 63.0
ClCG11G013230 Citrullus lanatus HOM05D002601 ORTHO05D002884 3.7e-10 67.8 54 59.3
Gohir.A11G103900 Gossypium hirsutum HOM05D002601 ORTHO05D002884 4.8e-10 67.4 54 61.1
Sabra14G0084100 Salix brachista HOM05D002601 ORTHO05D002884 4.8e-10 67.4 54 64.8
HPP92_021932 Vanilla planifolia HOM05D002601 ORTHO05D002884 6.3e-10 67.0 54 57.4
Aqoxy2G02514 Aquilegia oxysepala HOM05D002601 ORTHO05D002884 1.4e-09 65.9 54 59.3
Potri.014G114000 Populus trichocarpa HOM05D002601 ORTHO05D002884 1.4e-09 65.9 54 63.0
Cfa004894 Carpinus fangiana HOM05D002601 ORTHO05D002884 1.8e-09 65.5 54 64.8
Psat3g017240 Pisum sativum HOM05D002601 ORTHO05D002884 1.8e-09 65.5 54 59.3
Glyma.03G223500 Glycine max HOM05D002601 ORTHO05D002884 2.4e-09 65.1 54 59.3
Prupe.7G036500 Prunus persica HOM05D002601 ORTHO05D002884 2.4e-09 65.1 54 63.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 3.1e-09 64.7 51 62.7
PGR142G1756 Punica granatum HOM05D002601 ORTHO05D002884 3.1e-09 64.7 54 63.0
HanXRQChr06g0167981 Helianthus annuus HOM05D002601 ORTHO05D002884 4.1e-09 64.3 54 61.1
ATR0796G161 Amborella trichopoda HOM05D002601 ORTHO05D002884 7.0e-09 63.5 54 57.4
CsaV3_5G029740 Cucumis sativus L. HOM05D002601 ORTHO05D002884 7.0e-09 63.5 54 55.6
TAR365G0121 Trochodendron aralioides HOM05D002601 ORTHO05D002884 7.0e-09 63.5 48 66.7
EL10As5g23616 Beta vulgaris HOM05D002601 ORTHO05D002884 1.2e-08 62.8 54 59.3
TWI59G0984 Tripterygium wilfordii HOM05D002601 ORTHO05D002884 1.2e-08 62.8 54 59.3
arahy.Tifrunner.gnm1.ann1.C6NCIG Arachis hypogaea HOM05D002601 ORTHO05D002884 1.6e-08 62.4 54 59.3
CANSAT25G2156 Cannabis sativa HOM05D002601 ORTHO05D002884 1.6e-08 62.4 54 57.4
MELO3C011817.2 Cucumis melo HOM05D002601 ORTHO05D002884 1.6e-08 62.4 54 53.7
DCAR_018245 Daucus carota HOM05D002601 ORTHO05D002884 1.6e-08 62.4 54 59.3
GSVIVG01028263001 Vitis vinifera HOM05D002601 ORTHO05D002884 2.0e-08 62.0 54 57.4
arahy.Tifrunner.gnm1.ann1.5MFX44 Arachis hypogaea HOM05D002601 ORTHO05D002884 3.5e-08 61.2 54 57.4
THA.LOC104802120 Tarenaya hassleriana HOM05D002601 ORTHO05D002884 3.5e-08 61.2 54 59.3
Sp4g29020 Schrenkiella parvula HOM05D002601 ORTHO05D002884 5.9e-08 60.5 54 59.3
CAN.G173.2 Capsicum annuum HOM05D002601 ORTHO05D022131 7.7e-08 60.1 55 54.5
MD05G1002600 Malus domestica HOM05D002601 ORTHO05D002884 7.7e-08 60.1 54 59.3
Aa31LG1G28380 Aethionema arabicum HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 55.6
AL4G46510 Arabidopsis lyrata HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 59.3
AUR62011696 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 55.6
AUR62024555 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 55.6
Thhalv10001468m.g Eutrema salsugineum HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 57.4
Zm00001eb417410 Zea mays HOM05D002601 ORTHO05D002884 1.0e-07 59.7 54 57.4
AT2G47020 Arabidopsis thaliana HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 59.3
A05p00780 Brassica napus HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 57.4
C04p00940 Brassica napus HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 57.4
BolC4t21732H Brassica oleracea HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 57.4
BraA05t19081Z Brassica rapa HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 57.4
Cpa.g.sc41.93 Carica papaya HOM05D002601 ORTHO05D022131 1.3e-07 59.3 55 61.8
Sed0003280 Sechium edule HOM05D002601 ORTHO05D002884 1.3e-07 59.3 54 51.9
FvH4_6g25260 Fragaria vesca HOM05D002601 ORTHO05D002884 1.7e-07 58.9 54 53.7
FAN05G1271 Fragaria x ananassa HOM05D002601 ORTHO05D002884 1.7e-07 58.9 54 53.7
Nitab4.5_0004137g0010 Nicotiana tabacum HOM05D002601 ORTHO05D002884 1.7e-07 58.9 54 51.9
Carub.0004s2976 Capsella rubella HOM05D002601 ORTHO05D002884 2.9e-07 58.2 54 57.4
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 5.0e-07 57.4 54 59.3
Zm00001eb417430 Zea mays HOM05D002601 ORTHO05D002884 5.0e-07 57.4 54 55.6
SalBow2G3536 Salvia bowleyana HOM05D002601 ORTHO05D002884 6.6e-07 57.0 54 48.1
Migut.N00922 Erythranthe guttata HOM05D002601 ORTHO05D002884 1.5e-06 55.8 54 44.4
Migut.O00616 Erythranthe guttata HOM05D002601 ORTHO05D002884 1.5e-06 55.8 54 44.4
Nitab4.5_0000338g0140 Nicotiana tabacum HOM05D002601 ORTHO05D002884 1.5e-06 55.8 54 50.0
Manes.05G010000 Manihot esculenta HOM05D002601 ORTHO05D002884 1.9e-06 55.5 55 56.4
RcHm_v2.0_Chr2g0125161 Rosa chinensis HOM05D002601 ORTHO05D002884 1.9e-06 55.5 54 53.7
Solyc03g078020.4 Solanum lycopersicum HOM05D002601 ORTHO05D002884 5.5e-06 53.9 54 48.1
Sopen03g020430 Solanum pennellii HOM05D002601 ORTHO05D002884 5.5e-06 53.9 54 48.1


User provided reference genes

Program Settings