Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.4e-136 488.0 262 100.0
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.1e-134 480.7 262 98.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 4.4e-128 461.5 262 91.6
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 91.2
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 8.4e-127 457.2 262 92.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 90.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-126 456.4 262 91.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.2e-126 455.3 262 91.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 91.2
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 91.2
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 90.5
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 90.5
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 90.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.1e-125 452.6 262 90.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.1e-125 452.6 262 90.8
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 89.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 89.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 89.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 89.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 90.5
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 90.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 90.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 89.3
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.1e-124 448.0 262 89.3
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 8.7e-124 447.2 262 89.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.1e-123 446.8 261 90.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 90.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.5e-123 446.4 262 89.7
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 89.3
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.5
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.1e-122 442.6 262 88.9
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 89.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 89.3
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.2
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 87.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 87.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 87.4
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.0e-120 436.0 259 90.3
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 87.0
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 87.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.9
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 85.9
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.3
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 88.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.9
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 86.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.8e-119 431.8 262 85.5
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 86.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.4
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 8.4e-119 430.6 263 86.7
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 84.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 87.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.4e-118 429.1 263 86.3
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 86.3
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.7
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-117 426.4 263 85.9
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.7
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 85.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.4
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.0
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.4
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.1e-116 421.4 264 85.6
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.1e-115 420.2 264 85.2
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.3e-115 418.7 263 83.7
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.6e-115 417.9 251 85.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 81.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.7e-114 415.2 239 91.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 82.8
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-112 410.2 263 81.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.2e-112 410.2 262 82.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.6e-112 409.1 262 82.4
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 81.1
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.2e-111 406.0 263 82.5
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.8e-111 405.2 247 87.4
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.8e-111 405.2 247 87.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 81.3
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 79.8
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.2e-109 400.2 263 82.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 82.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 79.8
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 79.4
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 79.4
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 79.4
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 79.4
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.7e-109 399.1 246 86.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.4
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.6e-109 398.3 263 82.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.4
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.0
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 79.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 78.6
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 78.7
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 78.7
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 78.7
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 4.8e-106 388.3 270 76.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 80.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 79.5
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.9e-105 384.4 263 79.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 264 80.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 79.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.5e-104 381.7 263 79.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.8e-103 378.6 248 81.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.9e-103 378.3 270 74.1
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.5e-102 374.8 262 79.0
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.6e-101 373.2 218 90.8
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.1e-97 358.6 249 74.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.4e-96 355.5 262 74.8
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 5.9e-96 354.8 241 80.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 3.8e-95 352.1 210 87.6
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.2e-94 348.6 214 86.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.5e-94 348.2 238 75.6
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.1e-93 346.3 234 76.9
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 6.1e-93 344.7 226 77.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.7e-91 338.2 263 67.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 3.7e-90 335.5 223 75.8
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.5e-88 330.1 265 67.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.3e-83 312.4 250 72.0
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.7e-83 310.8 247 70.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.1e-81 307.4 267 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.9e-80 301.6 218 72.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.5e-78 296.2 228 65.8
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.7e-77 292.7 250 66.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.8e-76 290.0 204 77.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.3e-74 283.9 262 65.6
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 4.5e-72 275.4 263 60.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 4.5e-72 275.4 208 68.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.6e-67 259.6 270 55.6
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.3e-66 257.3 211 64.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-63 246.9 235 64.3
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.7e-56 223.0 130 85.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 4.2e-54 215.7 244 49.2
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.7e-53 212.2 120 90.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 9.8e-51 204.5 138 78.3
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.2e-50 203.4 245 49.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.9e-46 190.3 179 61.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.6e-46 188.7 118 83.9
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.0e-40 168.7 191 53.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.8e-37 159.8 141 65.2
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.2e-29 134.4 96 69.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.4e-25 120.2 69 91.3


User provided reference genes

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