Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017920 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.3e-66 255.4 126 100.0
CSS0010723 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.2e-64 248.8 126 96.8
CSS0036734 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.2e-64 248.8 126 96.8
CSS0024369 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.5e-60 235.3 126 91.3
CSS0046174 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 4.0e-50 201.4 107 93.5
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 3.3e-36 155.2 123 65.9
Dinv41384 Davidia involucrata HOM05D000344 ORTHO05D005296 2.8e-35 152.1 125 66.4
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 8.1e-35 150.6 131 65.6
GSVIVG01001912001 Vitis vinifera HOM05D000344 ORTHO05D005296 6.4e-32 141.0 125 60.8
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 4.1e-31 138.3 111 67.6
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 4.1e-31 138.3 126 59.5
Hma1.2p1_0222F.1_g093480 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.0e-29 133.7 125 60.0
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 5.6e-28 127.9 129 58.1
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 1.6e-27 126.3 127 58.3
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 2.1e-27 125.9 97 66.0
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 3.6e-27 125.2 100 66.0
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 3.6e-27 125.2 115 60.0
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 6.2e-27 124.4 110 62.7
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 1.1e-26 123.6 129 56.6
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 5.2e-26 121.3 100 64.0
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 6.8e-26 120.9 125 56.0
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 3.4e-25 118.6 94 63.8
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 4.4e-25 118.2 113 56.6
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 4.4e-25 118.2 113 56.6
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 1.7e-24 116.3 97 62.9
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 1.7e-24 116.3 93 61.3
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 2.9e-24 115.5 121 52.1
TAR636G0133 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.8e-24 115.2 125 56.0
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 4.9e-24 114.8 93 60.2
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 6.4e-24 114.4 124 50.0
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.9e-23 112.8 108 59.3
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 7.1e-23 110.9 111 53.2
Lj9A682T45 Lonicera japonica HOM05D000344 ORTHO05D014129 9.3e-23 110.5 117 55.6
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.2e-22 110.2 100 55.0
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.1e-22 109.4 95 61.1
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 2.1e-22 109.4 124 48.4
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 2.7e-22 109.0 111 52.3
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 2.7e-22 109.0 97 60.8
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 3.5e-22 108.6 100 54.0
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 3.5e-22 108.6 127 52.0
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.5e-22 108.6 93 57.0
Glyma.02G203500 Glycine max HOM05D000344 ORTHO05D005296 4.6e-22 108.2 123 52.8
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 6.0e-22 107.8 125 50.4
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 1.3e-21 106.7 125 48.0
Cpa.g.sc46.148 Carica papaya HOM05D000344 ORTHO05D005296 1.3e-21 106.7 100 58.0
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.3e-21 106.7 125 54.4
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.7e-21 106.3 122 51.6
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 2.3e-21 105.9 110 53.6
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 2.3e-21 105.9 100 54.0
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 2.3e-21 105.9 122 52.5
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 2.3e-21 105.9 124 50.8
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 3.0e-21 105.5 116 50.9
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.9e-21 105.1 111 50.5
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 6.6e-21 104.4 116 48.3
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 6.6e-21 104.4 104 56.7
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 8.7e-21 104.0 100 56.0
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 8.7e-21 104.0 96 55.2
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 8.7e-21 104.0 139 52.5
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 1.1e-20 103.6 106 55.7
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 1.1e-20 103.6 126 46.8
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.5e-20 103.2 116 50.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 1.9e-20 102.8 122 52.5
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.9e-20 102.8 122 53.3
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 3.3e-20 102.1 100 53.0
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 3.3e-20 102.1 100 53.0
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 4.3e-20 101.7 123 48.8
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.6e-20 101.3 94 56.4
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 5.6e-20 101.3 114 53.5
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 9.6e-20 100.5 97 55.7
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 9.6e-20 100.5 99 52.5
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 1.3e-19 100.1 100 53.0
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.3e-19 100.1 94 56.4
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.3e-19 100.1 94 56.4
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 1.3e-19 100.1 98 53.1
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 1.3e-19 100.1 96 58.3
Hund12031 Selenicereus undatus HOM05D000344 ORTHO05D005296 2.1e-19 99.4 93 58.1
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 2.8e-19 99.0 95 58.9
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 4.8e-19 98.2 105 53.3
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 4.8e-19 98.2 119 50.4
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 4.8e-19 98.2 99 53.5
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 4.8e-19 98.2 117 50.4
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 6.2e-19 97.8 103 50.5
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 6.2e-19 97.8 113 53.1
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.1e-19 97.4 97 54.6
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 8.1e-19 97.4 97 54.6
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.8e-18 96.3 104 51.9
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 4.0e-18 95.1 110 53.6
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 4.0e-18 95.1 96 53.1
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 5.3e-18 94.7 120 48.3
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 5.3e-18 94.7 110 49.1
Haze_19214 Corylus avellana HOM05D000344 ORTHO05D014129 6.9e-18 94.4 100 54.0
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 6.9e-18 94.4 98 51.0
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 1.5e-17 93.2 105 50.5
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 1.5e-17 93.2 115 45.2
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.5e-17 93.2 100 53.0
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 1.5e-17 93.2 112 50.9
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.0e-17 92.8 123 48.0
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.6e-17 92.4 123 48.0
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 2.6e-17 92.4 113 52.2
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 5.8e-17 91.3 106 51.9
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 9.9e-17 90.5 116 47.4
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.3e-16 90.1 110 50.9
HPP92_010385 Vanilla planifolia HOM05D000344 ORTHO05D005296 1.7e-16 89.7 109 45.0
Hma1.2p1_0028F.1_g017520 Hydrangea macrophylla HOM05D000344 ORTHO05D014129 4.9e-16 88.2 102 52.9
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 1.4e-15 86.7 107 45.8
BcaNung07256 Brassica carinata HOM05D000344 ORTHO05D005296 1.4e-15 86.7 107 45.8
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 5.4e-15 84.7 100 47.0
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 7.1e-15 84.3 100 47.0
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 1.2e-14 83.6 114 47.4
SHI02821 Sapria himalayana HOM05D000344 ORTHO05D005296 1.6e-14 83.2 97 48.5
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 3.5e-14 82.0 119 45.4
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 3.5e-14 82.0 100 46.0
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 4.6e-14 81.6 100 47.0
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 4.6e-14 81.6 98 51.0
Actinidia38329 Actinidia chinensis HOM05D000344 ORTHO05D005296 7.9e-14 80.9 43 86.0
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 1.0e-13 80.5 98 51.0
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 1.7e-13 79.7 106 49.1
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 3.0e-13 79.0 99 44.4
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 1.1e-12 77.0 97 47.4
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.9e-12 76.3 105 42.9
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 1.6e-11 73.2 100 48.0
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 4.8e-11 71.6 95 46.3
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 6.2e-11 71.2 128 39.8
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 1.2e-09 67.0 75 49.3
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 1.2e-09 67.0 96 42.7
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 3.4e-09 65.5 122 40.2
BcaB05g22391 Brassica carinata HOM05D000344 ORTHO05D014129 1.7e-08 63.2 70 50.0
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 1.7e-08 63.2 70 50.0
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 1.7e-08 63.2 70 50.0
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 1.7e-08 63.2 70 50.0
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 4.9e-08 61.6 100 40.0
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 8.4e-08 60.8 71 49.3
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 2.4e-07 59.3 98 38.8
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 3.2e-07 58.9 74 41.9
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 3.2e-07 58.9 119 39.5


User provided reference genes

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