Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.4e-136 488.8 237 100.0
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.6e-113 412.9 225 88.4
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 2.4e-112 409.1 228 86.0
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 5.3e-112 407.9 228 85.1
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.6e-111 405.6 231 86.6
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 3.4e-111 405.2 224 85.3
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 4.9e-110 401.4 224 84.4
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 6.4e-110 401.0 227 83.7
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 1.1e-109 400.2 223 85.7
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.1e-109 400.2 224 84.8
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 3.2e-109 398.7 223 83.0
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 4.2e-109 398.3 223 83.9
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 5.5e-109 397.9 225 81.8
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 5.5e-109 397.9 224 82.1
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 9.3e-109 397.1 224 82.6
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 1.2e-108 396.7 227 82.4
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 2.1e-108 396.0 226 82.3
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.7e-108 395.6 224 82.1
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.5e-108 395.2 221 83.7
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 7.9e-108 394.0 227 81.9
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 1.0e-107 393.7 222 84.7
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 1.0e-107 393.7 222 84.2
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.3e-107 392.5 225 82.2
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 5.1e-107 391.3 224 82.1
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 6.7e-107 391.0 228 81.1
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 8.7e-107 390.6 228 80.3
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 1.1e-106 390.2 225 84.0
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.5e-106 389.8 228 80.7
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 1.5e-106 389.8 227 79.7
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.5e-106 389.8 227 80.6
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.9e-106 389.4 227 81.5
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.5e-106 389.0 228 80.7
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 2.5e-106 389.0 223 82.5
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 2.5e-106 389.0 225 80.9
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 3.3e-106 388.7 228 80.3
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.3e-106 388.3 223 82.1
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 4.3e-106 388.3 228 80.7
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 5.6e-106 387.9 228 79.8
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 5.6e-106 387.9 225 81.3
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 7.4e-106 387.5 228 79.8
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.6e-106 387.1 222 81.5
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.6e-106 387.1 222 81.5
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 1.3e-105 386.7 228 80.3
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 3.7e-105 385.2 224 81.2
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 3.7e-105 385.2 231 80.1
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 4.8e-105 384.8 225 80.0
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.8e-105 384.8 222 80.6
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 8.2e-105 384.0 229 79.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.1e-104 383.6 225 80.0
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.4e-104 383.3 224 80.8
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 1.4e-104 383.3 222 79.7
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.8e-104 382.9 228 80.7
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.4e-104 382.5 227 81.9
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 5.3e-104 381.3 222 80.6
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 1.2e-103 380.2 221 82.4
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.5e-103 379.8 222 78.8
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.5e-103 379.8 223 79.8
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 2.0e-103 379.4 224 81.2
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.6e-103 379.0 221 81.4
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 4.5e-103 378.3 222 78.4
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.0e-102 377.1 228 79.8
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.0e-102 377.1 222 77.9
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.3e-102 376.7 225 79.1
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 1.7e-102 376.3 233 77.7
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 2.2e-102 375.9 220 79.1
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 6.5e-102 374.4 222 78.4
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.4e-101 373.2 221 80.5
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.9e-101 372.9 222 79.3
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 4.2e-101 371.7 225 77.8
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 4.2e-101 371.7 224 78.6
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 5.5e-101 371.3 225 78.7
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 7.1e-101 370.9 224 78.1
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.2e-100 370.2 221 80.1
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 2.1e-100 369.4 233 78.5
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 2.7e-100 369.0 220 79.5
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 4.6e-100 368.2 225 78.2
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 4.6e-100 368.2 225 78.2
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 7.9e-100 367.5 221 78.3
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 3.9e-99 365.2 222 77.9
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.9e-99 365.2 224 76.8
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 5.1e-99 364.8 221 77.8
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.9e-98 362.8 229 77.7
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 3.3e-98 362.1 223 76.2
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.2e-97 359.4 221 75.6
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 4.8e-97 358.2 222 77.5
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.8e-96 356.3 226 78.3
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 1.5e-95 353.2 245 71.0
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 3.4e-95 352.1 223 73.1
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 7.7e-95 350.9 224 75.9
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 2.2e-94 349.4 223 73.1
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.2e-94 349.4 229 73.8
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 4.6e-92 341.7 226 73.5
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.6e-92 341.7 234 73.1
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.5e-90 336.7 234 71.4
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 5.3e-88 328.2 207 75.8
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 5.9e-87 324.7 191 80.6
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 7.7e-87 324.3 222 68.9
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.2e-86 322.8 222 70.7
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.6e-84 316.6 223 68.2
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 3.3e-82 308.9 221 65.2
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 3.3e-82 308.9 236 66.1
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 7.4e-82 307.8 176 84.1
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 9.7e-82 307.4 222 67.1
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 2.2e-81 306.2 234 66.7
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 6.3e-81 304.7 227 67.8
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.4e-80 303.5 222 66.2
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 3.1e-80 302.4 227 67.4
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.0e-79 299.7 222 65.3
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 5.9e-79 298.1 179 79.9
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 7.2e-77 291.2 221 61.1
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 7.2e-77 291.2 220 65.9
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.6e-76 290.0 167 81.4
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 3.6e-76 288.9 176 82.4
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 4.5e-71 271.9 165 76.4
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.3e-70 270.4 165 78.2
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 3.2e-69 265.8 217 58.5
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 8.8e-67 257.7 166 74.7
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 1.7e-57 226.9 136 75.0
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.4e-56 223.8 135 80.7
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.4e-56 223.0 151 70.9
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.6e-52 210.3 139 72.7
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 7.5e-50 201.4 215 46.0
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 1.7e-49 200.3 132 70.5
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.1e-48 197.6 136 66.2
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 3.6e-44 182.6 168 59.5
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 6.1e-44 181.8 210 46.7
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 1.5e-42 177.2 134 63.4
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 3.7e-41 172.6 136 66.2
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.7e-33 146.0 91 73.6
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 9.5e-29 131.3 131 55.7
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.4e-24 117.5 90 61.1
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 6.0e-23 112.1 131 51.9
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.2e-19 99.0 80 61.2
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-19 99.0 127 45.7
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 3.6e-12 76.3 119 36.1
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 4.8e-12 75.9 41 78.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 4.4e-10 69.3 86 47.7
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 8.4e-09 65.1 48 66.7
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 9.3e-08 61.6 84 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 6.0e-07 58.9 145 32.4


User provided reference genes

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