Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 9.5e-19 95.9 51 100.0
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 3.9e-12 73.9 49 69.4
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-11 71.6 49 67.3
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-11 71.6 49 67.3
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.5e-11 71.2 49 67.3
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 2.5e-11 71.2 49 67.3
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 3.3e-11 70.9 49 67.3
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 4.3e-11 70.5 49 65.3
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 5.6e-11 70.1 49 65.3
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 5.6e-11 70.1 49 63.3
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 5.6e-11 70.1 49 65.3
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 7.3e-11 69.7 49 63.3
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 7.3e-11 69.7 49 63.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 7.3e-11 69.7 49 61.2
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 7.3e-11 69.7 49 61.2
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 7.3e-11 69.7 49 63.3
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 1.3e-10 68.9 49 63.3
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 1.3e-10 68.9 49 65.3
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 1.3e-10 68.9 49 65.3
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 1.3e-10 68.9 49 63.3
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 1.6e-10 68.6 49 61.2
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 2.1e-10 68.2 49 65.3
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 2.1e-10 68.2 49 65.3
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.1e-10 68.2 49 61.2
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 2.1e-10 68.2 49 61.2
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 2.1e-10 68.2 49 63.3
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 2.8e-10 67.8 49 61.2
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 3.6e-10 67.4 49 61.2
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 3.6e-10 67.4 49 59.2
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 3.6e-10 67.4 49 59.2
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 4.8e-10 67.0 49 59.2
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 6.2e-10 66.6 49 59.2
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 8.1e-10 66.2 34 85.3
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 61.2
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 1.1e-09 65.9 49 63.3
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 1.1e-09 65.9 49 63.3
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 57.1
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 63.3
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 61.2
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 61.2
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.1e-09 65.9 49 59.2
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 1.4e-09 65.5 49 59.2
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 1.4e-09 65.5 49 59.2
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 1.4e-09 65.5 49 61.2
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.4e-09 65.5 49 59.2
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 1.8e-09 65.1 49 61.2
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 1.8e-09 65.1 49 61.2
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 1.8e-09 65.1 49 61.2
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 61.2
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 61.2
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 61.2
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 57.1
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 57.1
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 2.4e-09 64.7 49 57.1
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 3.1e-09 64.3 49 61.2
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 3.1e-09 64.3 49 57.1
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.1e-09 64.3 49 59.2
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.1e-09 64.3 49 61.2
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 4.0e-09 63.9 49 57.1
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 4.0e-09 63.9 49 57.1
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 5.3e-09 63.5 49 57.1
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 5.3e-09 63.5 49 59.2
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 6.9e-09 63.2 49 55.1
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 9.0e-09 62.8 49 55.1
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 9.0e-09 62.8 49 57.1
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 1.2e-08 62.4 49 55.1
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.2e-08 62.4 49 53.1
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.2e-08 62.4 49 53.1
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.2e-08 62.4 49 55.1
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.5e-08 62.0 34 82.4
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.5e-08 62.0 39 74.4
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 1.5e-08 62.0 34 76.5
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 2.0e-08 61.6 49 55.1
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 2.6e-08 61.2 49 55.1
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 3.4e-08 60.8 49 53.1
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 3.4e-08 60.8 49 51.0
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 4.4e-08 60.5 34 76.5
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 7.6e-08 59.7 49 49.0
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 7.6e-08 59.7 49 53.1
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 9.9e-08 59.3 37 75.7
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 9.9e-08 59.3 49 51.0
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 1.3e-07 58.9 49 55.1
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 4.9e-07 57.0 35 80.0
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 1.1e-06 55.8 49 51.0
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 1.1e-06 55.8 49 49.0
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 2.4e-06 54.7 35 77.1
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 4.2e-06 53.9 49 46.9


User provided reference genes

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