Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.4e-146 523.1 296 100.0
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.5e-143 511.1 296 95.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.5e-111 404.1 307 76.9
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.7e-110 401.7 307 77.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 7.3e-103 377.9 311 71.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.8e-102 375.9 303 75.6
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.6e-102 375.6 308 74.4
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 8.9e-101 370.9 301 73.4
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.7e-99 366.7 298 72.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.4e-98 363.6 306 71.9
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.2e-98 362.5 295 75.9
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.2e-98 362.5 299 73.6
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 3.2e-98 362.5 298 72.1
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.2e-97 360.5 298 71.8
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.2e-97 360.5 301 70.4
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.3e-96 357.1 298 70.8
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.3e-96 356.3 302 71.2
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 3.0e-96 355.9 302 71.2
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.1e-95 354.0 299 69.9
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.9e-95 353.2 301 69.8
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 3.3e-95 352.4 303 69.6
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 4.3e-95 352.1 304 72.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 5.6e-95 351.7 301 69.4
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 9.6e-95 350.9 299 68.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 9.6e-95 350.9 301 68.1
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 9.6e-95 350.9 295 70.5
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.2e-94 350.5 298 68.8
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 4.7e-94 348.6 299 70.6
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 6.2e-94 348.2 304 67.8
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 8.1e-94 347.8 209 87.1
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 1.4e-93 347.1 304 70.1
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.8e-93 346.7 281 73.7
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.8e-93 346.7 299 68.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.1e-93 345.9 217 85.3
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 5.2e-93 345.1 303 69.6
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 6.9e-93 344.7 307 69.1
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 6.9e-93 344.7 292 71.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 8.9e-93 344.4 306 67.0
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 8.9e-93 344.4 299 68.9
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.2e-92 344.0 292 71.2
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.5e-92 343.6 301 69.8
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 1.5e-92 343.6 298 68.1
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 2.6e-92 342.8 299 68.6
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 3.4e-92 342.4 298 68.1
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.4e-92 342.4 303 68.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.9e-92 340.9 304 68.4
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.9e-91 339.3 300 67.3
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 2.9e-91 339.3 298 72.8
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.9e-91 339.3 299 68.6
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.9e-91 339.3 306 68.3
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.8e-91 339.0 299 67.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 6.4e-91 338.2 299 67.2
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 6.4e-91 338.2 306 67.0
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 8.4e-91 337.8 299 66.9
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 8.4e-91 337.8 299 68.2
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.1e-90 337.4 301 69.1
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-90 337.4 301 68.1
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.4e-90 337.0 298 70.1
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.9e-90 336.7 301 68.8
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.4e-90 336.3 307 67.4
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 3.2e-90 335.9 306 66.7
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 4.2e-90 335.5 299 68.2
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 4.2e-90 335.5 306 67.0
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.2e-90 335.5 302 67.2
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 9.3e-90 334.3 297 67.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.2e-89 334.0 298 69.5
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.6e-89 333.6 300 66.7
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.0e-89 331.6 313 66.1
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.0e-89 331.6 301 68.1
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.0e-88 330.9 298 66.4
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.7e-88 330.1 299 66.2
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.7e-88 330.1 303 65.7
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.9e-88 328.9 301 66.8
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.9e-88 328.9 303 65.7
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.1e-88 328.6 298 66.1
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 8.7e-88 327.8 310 63.2
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.1e-87 327.4 298 68.5
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.5e-87 327.0 299 66.9
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.9e-87 326.6 299 67.2
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.9e-87 326.6 299 66.2
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.3e-87 325.9 302 66.2
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 3.3e-87 325.9 298 67.4
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 4.3e-87 325.5 299 66.2
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 5.6e-87 325.1 300 64.3
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 5.6e-87 325.1 307 68.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 7.3e-87 324.7 300 66.7
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 9.6e-87 324.3 300 65.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.6e-86 323.6 218 81.2
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 8.1e-86 321.2 299 64.2
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.1e-85 320.9 272 68.0
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 6.9e-85 318.2 298 65.1
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 6.9e-85 318.2 306 63.1
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.5e-84 317.0 306 65.7
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.5e-84 315.5 298 63.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.3e-83 313.9 303 63.7
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 4.9e-83 312.0 311 61.7
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 6.4e-83 311.6 358 58.1
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.9e-82 310.1 214 79.0
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.4e-82 309.7 195 82.1
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 4.2e-82 308.9 195 83.6
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 4.2e-82 308.9 303 63.7
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 5.4e-82 308.5 341 60.1
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.2e-81 307.4 302 63.2
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.2e-81 307.4 299 62.2
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.7e-81 306.2 304 60.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.7e-81 306.2 296 63.2
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 3.5e-81 305.8 304 61.2
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.5e-81 305.8 370 56.2
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 4.6e-81 305.4 300 63.7
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 6.0e-81 305.1 308 62.0
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-80 303.9 305 62.0
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.8e-80 303.5 304 60.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.8e-80 303.5 286 64.7
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.0e-80 302.8 303 62.0
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.9e-80 302.4 290 63.8
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 8.7e-80 301.2 310 61.0
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 8.7e-80 301.2 295 62.7
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 8.7e-80 301.2 310 61.0
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 5.6e-79 298.5 295 62.7
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 5.6e-79 298.5 367 55.0
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 7.4e-79 298.1 300 61.7
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 2.8e-78 296.2 271 65.3
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.8e-78 296.2 205 78.0
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 6.2e-78 295.0 295 62.4
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 3.1e-77 292.7 288 63.9
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.2e-75 286.6 193 80.8
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.2e-75 286.6 295 57.3
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.9e-75 285.4 193 77.7
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.2e-74 282.7 299 56.9
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.2e-74 282.3 284 63.0
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.1e-73 280.0 199 75.9
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.0e-72 277.7 182 79.1
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.5e-71 273.9 210 70.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 4.8e-70 268.9 229 67.2
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.1e-69 267.7 200 71.5
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.8e-69 266.9 214 70.1
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.4e-69 266.5 212 68.9
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-68 264.2 202 69.8
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 2.2e-67 260.0 265 60.4
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.9e-67 259.6 350 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 8.4e-67 258.1 224 62.5
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 5.1e-64 248.8 265 56.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 2.5e-63 246.5 257 60.3
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 2.9e-59 233.0 308 51.0
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 4.3e-55 219.2 203 62.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 7.4e-55 218.4 181 63.5
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.7e-49 199.9 221 56.6
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.6e-49 199.1 192 63.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 5.7e-47 192.2 186 58.1
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.3e-38 164.5 107 85.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 7.7e-36 155.2 209 44.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.9e-34 150.6 89 82.0
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 2.7e-33 146.7 181 44.2
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.5e-31 138.7 104 69.2
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.0e-24 118.2 212 37.3
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.0e-24 116.3 197 40.6
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.0e-23 114.0 77 83.1
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.1e-21 108.2 87 64.4
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-21 108.2 63 85.7
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.4e-21 107.1 173 44.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.1e-21 106.7 63 84.1
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 3.0e-16 90.1 165 35.8
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 2.9e-11 73.6 60 66.7
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 2.2e-06 57.4 51 60.8


User provided reference genes

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