Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 9.3e-83 310.1 148 100.0
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 3.0e-57 225.3 143 74.8
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.7e-52 209.5 147 69.4
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 9.4e-51 203.8 147 67.3
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.8e-49 199.5 148 63.5
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.3e-49 199.1 148 62.8
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 5.2e-49 198.0 147 66.7
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 8.8e-49 197.2 148 64.2
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 5.7e-48 194.5 140 62.1
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.7e-47 191.8 148 62.2
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 9.1e-46 187.2 148 61.5
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 3.5e-45 185.3 149 61.1
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 5.0e-44 181.4 149 58.4
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.1e-43 180.3 149 58.4
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.5e-43 179.9 146 61.0
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.9e-43 179.5 140 60.0
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 3.3e-43 178.7 147 55.8
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 5.5e-43 177.9 148 60.1
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 9.5e-43 177.2 149 58.4
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.6e-42 176.4 140 59.3
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 2.1e-42 176.0 145 57.2
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.8e-42 175.6 129 62.8
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 4.7e-42 174.9 148 59.5
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 4.7e-42 174.9 152 59.9
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 6.1e-42 174.5 146 59.6
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 8.0e-42 174.1 137 59.1
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.0e-41 173.7 149 56.4
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.4e-41 173.3 140 62.1
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.8e-41 172.9 146 58.9
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 8.9e-41 170.6 151 59.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 2.6e-40 169.1 147 60.5
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 5.7e-40 167.9 140 57.1
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 1.3e-39 166.8 151 57.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.3e-39 166.8 144 57.6
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 1.1e-38 163.7 145 51.7
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.1e-38 163.7 148 55.4
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 1.1e-38 163.7 127 59.8
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.8e-38 162.9 141 56.0
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.4e-38 162.5 139 59.7
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.4e-38 162.5 142 57.7
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 3.1e-38 162.2 136 56.6
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 4.1e-38 161.8 147 56.5
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 7.0e-38 161.0 145 55.2
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 7.0e-38 161.0 161 53.4
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.7e-37 159.1 147 53.7
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 3.5e-37 158.7 145 55.2
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 3.5e-37 158.7 131 59.5
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.5e-37 158.7 124 58.1
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 7.8e-37 157.5 149 53.0
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.0e-36 157.1 145 55.2
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.3e-36 156.8 121 57.0
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.7e-36 156.4 134 57.5
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.7e-36 156.4 142 54.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 1.7e-36 156.4 127 58.3
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.3e-36 156.0 132 56.1
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.9e-36 155.6 127 58.3
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 5.0e-36 154.8 143 55.9
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 8.6e-36 154.1 127 56.7
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 8.6e-36 154.1 127 56.7
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 8.6e-36 154.1 149 54.4
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.1e-35 153.7 149 54.4
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.5e-35 153.3 131 58.0
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.5e-35 153.3 131 58.0
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 2.5e-35 152.5 170 48.2
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 4.3e-35 151.8 125 54.4
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 5.6e-35 151.4 145 49.7
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 5.6e-35 151.4 131 58.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 7.3e-35 151.0 138 50.7
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.8e-34 149.1 138 54.3
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 3.6e-34 148.7 149 52.3
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 4.7e-34 148.3 144 53.5
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 6.1e-34 147.9 125 55.2
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 8.0e-34 147.5 144 52.1
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 5.2e-33 144.8 140 57.1
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 8.9e-33 144.1 141 48.9
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 1.2e-32 143.7 141 49.6
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 2.0e-32 142.9 141 48.9
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 2.6e-32 142.5 142 51.4
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.4e-32 142.1 132 55.3
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 5.8e-32 141.4 126 54.8
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 6.4e-31 137.9 115 56.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.1e-30 137.1 131 51.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.1e-30 137.1 126 51.6
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.9e-30 136.3 123 51.2
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.9e-30 136.3 144 50.7
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 4.1e-30 135.2 141 44.0
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 5.4e-30 134.8 131 52.7
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.2e-30 134.0 125 51.2
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 4.6e-29 131.7 144 45.8
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 6.0e-29 131.3 117 57.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.3e-28 130.2 121 50.4
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.9e-27 126.3 117 52.1
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 4.3e-27 125.2 117 52.1
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 1.2e-26 123.6 124 48.4
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.6e-26 123.2 172 40.7
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 1.6e-26 123.2 132 47.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.2e-24 117.1 109 51.4
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.2e-24 117.1 109 51.4
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.5e-24 116.7 113 50.4
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.5e-24 116.7 118 48.3
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.6e-24 115.9 131 51.1
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 7.0e-22 107.8 116 49.1
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 4.6e-21 105.1 132 46.2
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.0e-20 104.0 69 63.8
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.2e-18 97.1 177 32.2
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 8.1e-18 94.4 109 41.3
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 8.9e-17 90.9 98 45.9
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.4e-14 82.8 79 45.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 6.2e-10 68.2 54 57.4
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.1e-09 67.4 52 59.6
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 5.2e-09 65.1 62 50.0
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.2e-08 63.9 54 57.4
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 1.3e-07 60.5 63 47.6
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.3e-07 60.5 86 37.2
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.2e-07 59.7 77 41.6
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 2.9e-07 59.3 56 51.8
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.9e-07 59.3 73 41.1
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 4.2e-06 55.5 54 51.9


User provided reference genes

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