Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.2e-63 246.5 145 100.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 9.2e-59 230.3 157 88.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 4.7e-47 191.4 158 69.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 6.2e-39 164.5 155 60.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 8.1e-39 164.1 157 62.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 4.0e-38 161.8 155 59.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 6.9e-38 161.0 154 61.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.5e-37 159.8 154 61.0
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.4e-37 158.7 157 60.5
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.7e-36 156.4 150 62.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.7e-36 156.4 154 65.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.9e-36 155.6 157 58.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.9e-36 155.6 154 59.7
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.1e-35 153.7 155 60.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 5.4e-35 151.4 156 59.0
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.3e-33 146.7 158 57.6
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.3e-33 146.7 154 63.6
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.7e-33 144.1 161 52.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.1e-32 143.7 164 52.4
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.9e-32 142.9 158 55.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-32 142.1 155 52.9
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.6e-31 139.8 162 51.2
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.7e-31 138.7 160 56.2
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.7e-31 138.7 158 53.2
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.8e-31 138.3 144 56.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.1e-30 135.6 156 55.8
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.1e-30 135.6 154 51.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.6e-29 132.5 153 52.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.5e-29 131.7 154 46.1
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 7.6e-29 131.0 156 50.6
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.8e-28 128.6 158 51.9
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-27 126.7 155 51.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-27 126.3 152 55.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-27 126.3 161 50.9
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.2e-27 125.2 160 51.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 7.1e-27 124.4 153 51.6
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.1e-27 124.4 151 54.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.6e-26 123.2 152 55.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.6e-26 123.2 152 55.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.6e-26 123.2 153 49.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.1e-26 122.9 168 47.6
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 6.0e-26 121.3 159 48.4
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 7.9e-26 120.9 152 48.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 7.9e-26 120.9 157 49.7
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-25 119.8 153 51.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.3e-25 119.4 149 47.7
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.3e-25 119.4 160 51.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 8.7e-25 117.5 149 47.7
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.1e-24 117.1 155 49.7
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 2.5e-24 115.9 152 50.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.5e-24 115.9 157 51.0
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.3e-23 113.6 154 50.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 2.1e-23 112.8 147 50.3
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-22 110.5 158 47.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-22 109.4 153 43.1
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-22 109.4 153 43.1
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.4e-22 109.4 158 46.2
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 9.0e-22 107.5 160 46.2
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.2e-21 107.1 151 46.4
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.2e-21 107.1 151 44.4
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.0e-21 106.3 154 44.2
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-21 105.9 148 44.6
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-21 105.9 148 44.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.3e-20 103.6 153 41.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-20 102.8 156 46.8
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 4.9e-20 101.7 156 44.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 6.5e-20 101.3 153 44.4
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 6.5e-20 101.3 148 43.9
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.4e-20 100.9 150 46.0
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.4e-19 100.1 149 43.6
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.4e-19 100.1 148 42.6
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 4.2e-19 98.6 138 42.0
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 9.3e-19 97.4 151 44.4
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.1e-18 96.3 151 44.4
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.7e-18 95.9 179 38.5
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 3.5e-18 95.5 157 47.8
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 4.6e-18 95.1 153 42.5
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 7.9e-18 94.4 131 44.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.0e-17 94.0 156 41.7
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.3e-17 93.6 159 40.9
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-16 90.5 183 36.6
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.5e-16 90.1 153 41.8
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 7.4e-16 87.8 150 38.0
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 2.2e-15 86.3 154 38.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.8e-15 85.9 159 38.4
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.7e-15 85.5 151 49.0
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.8e-14 83.2 178 33.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.4e-14 82.8 152 48.7
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-14 80.9 153 37.9
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.5e-13 80.1 122 40.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-13 79.0 123 37.4
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.7e-13 77.8 132 43.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.0e-12 77.4 153 36.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 5.0e-12 75.1 155 35.5
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-11 73.6 158 38.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-11 73.2 144 38.2
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-11 73.2 154 37.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-11 72.8 147 39.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 4.2e-11 72.0 126 37.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.2e-11 72.0 126 37.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 4.2e-11 72.0 155 35.5
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 5.5e-11 71.6 145 37.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.1e-10 69.7 126 36.5
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 4.6e-10 68.6 152 36.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.1e-10 68.2 148 33.1
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.8e-09 66.6 106 45.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.3e-09 66.2 148 33.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.3e-09 66.2 178 34.3
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.0e-09 65.9 153 36.6
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 8.8e-09 64.3 159 31.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.8e-09 64.3 147 38.1
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 8.8e-09 64.3 146 37.0
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.1e-08 63.9 84 45.2
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-08 63.9 147 38.1
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-08 63.9 154 33.8
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-08 63.5 154 35.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-08 63.2 153 34.0
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.5e-08 62.8 159 30.8
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-08 62.8 154 35.1
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 7.4e-08 61.2 149 34.2
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.4e-08 61.2 160 31.9
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 9.7e-08 60.8 144 35.4
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-07 60.1 153 39.2
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-07 59.3 120 40.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 2.8e-07 59.3 120 40.8
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 2.8e-07 59.3 120 40.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.7e-07 58.9 149 36.2
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 4.8e-07 58.5 167 34.7
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.8e-07 58.5 156 32.7
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 1.1e-06 57.4 166 28.9
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-06 57.0 146 38.4
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.4e-06 56.2 147 34.0
FAN07G1512 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.1e-06 55.8 56 64.3
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 5.3e-06 55.1 176 33.0
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 6.9e-06 54.7 166 28.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.9e-06 54.7 105 36.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 6.9e-06 54.7 135 31.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 9.1e-06 54.3 155 35.5


User provided reference genes

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