Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017842 Camellia sinensis var. sinensis HOM05D022590 ORTHO05D109026 1.5e-90 336.3 180 100.0
CSS0019795 Camellia sinensis var. sinensis HOM05D022590 ORTHO05D110830 1.3e-25 120.6 158 48.7
CSS0033499 Camellia sinensis var. sinensis HOM05D022590 ORTHO05D110323 1.9e-13 80.1 69 75.4
CSS0003073 Camellia sinensis var. sinensis HOM05D022590 ORTHO05D110131 1.8e-11 73.6 69 71.0
Solyc05g052220.3 Solanum lycopersicum HOM05D002225 ORTHO05D002271 9.2e-08 61.2 27 92.6
Sopen05g030760 Solanum pennellii HOM05D002225 ORTHO05D002271 9.2e-08 61.2 27 92.6
PGSC0003DMG402011656 Solanum tuberosum HOM05D002225 ORTHO05D002271 9.2e-08 61.2 27 92.6
Nitab4.5_0002279g0020 Nicotiana tabacum HOM05D002225 ORTHO05D002271 1.6e-07 60.5 28 89.3
Cc02_g05360 Coffea canephora HOM05D002225 ORTHO05D002271 2.7e-07 59.7 29 86.2
Nitab4.5_0000375g0260 Nicotiana tabacum HOM05D002225 ORTHO05D002271 2.7e-07 59.7 30 80.0
CSS0011340 Camellia sinensis var. sinensis HOM05D022590 ORTHO05D111268 3.5e-07 59.3 48 60.4
Ca_16865_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 3.5e-07 59.3 28 89.3
Ca_29952_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 3.5e-07 59.3 28 89.3
Manes.10G001500 Manihot esculenta HOM05D002225 ORTHO05D002271 3.5e-07 59.3 29 86.2
CsaV3_5G010960 Cucumis sativus L. HOM05D002225 ORTHO05D002271 4.6e-07 58.9 50 54.0
TAR633G0281 Trochodendron aralioides HOM05D002225 ORTHO05D002271 4.6e-07 58.9 49 57.1
ClCG07G005120 Citrullus lanatus HOM05D002225 ORTHO05D002271 7.8e-07 58.2 29 82.8
Medtr3g093960 Medicago truncatula HOM05D002225 ORTHO05D002271 7.8e-07 58.2 28 85.7
Nn5g26846 Nelumbo nucifera HOM05D002225 ORTHO05D002271 7.8e-07 58.2 27 88.9
QL08p064862 Quercus lobata HOM05D002225 ORTHO05D002271 7.8e-07 58.2 28 85.7
arahy.Tifrunner.gnm1.ann1.4SU7B4 Arachis hypogaea HOM05D002225 ORTHO05D002271 1.0e-06 57.8 27 88.9
arahy.Tifrunner.gnm1.ann1.L24DBG Arachis hypogaea HOM05D002225 ORTHO05D002271 1.0e-06 57.8 27 88.9
Duzib106G1786 Durio zibethinus HOM05D002225 ORTHO05D002271 1.0e-06 57.8 27 85.2
Lalb_Chr08g0239171 Lupinus albus HOM05D002225 ORTHO05D002271 1.0e-06 57.8 27 88.9
Psat5g068760 Pisum sativum HOM05D002225 ORTHO05D002271 1.0e-06 57.8 28 82.1
TPR.G16112 Trifolium pratense HOM05D002225 ORTHO05D002271 1.0e-06 57.8 27 88.9
TWI53G0084 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.0e-06 57.8 26 96.2
Gohir.A05G402900 Gossypium hirsutum HOM05D002225 ORTHO05D002271 1.3e-06 57.4 29 79.3
Cpa.g.sc19.56 Carica papaya HOM05D002225 ORTHO05D002271 1.7e-06 57.0 48 54.2
Haze_17358 Corylus avellana HOM05D002225 ORTHO05D002271 1.7e-06 57.0 29 82.8
Lsat_1_v5_gn_2_126241 Lactuca sativa HOM05D002225 ORTHO05D002271 1.7e-06 57.0 27 85.2
Potri.019G058300 Populus trichocarpa HOM05D002225 ORTHO05D002271 1.7e-06 57.0 27 85.2
Sed0009031 Sechium edule HOM05D002225 ORTHO05D002271 1.7e-06 57.0 29 79.3
TAR623G0431 Trochodendron aralioides HOM05D002225 ORTHO05D002271 1.7e-06 57.0 27 88.9
Actinidia31627 Actinidia chinensis HOM05D002225 ORTHO05D002271 2.3e-06 56.6 48 54.2
CANSAT56G2293 Cannabis sativa HOM05D002225 ORTHO05D002271 2.3e-06 56.6 27 85.2
CDE04G1638 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.3e-06 56.6 27 85.2
Nn2g10301 Nelumbo nucifera HOM05D002225 ORTHO05D002271 2.3e-06 56.6 27 85.2
CSS0031158 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 3.0e-06 56.2 27 85.2
Glyma.06G142700 Glycine max HOM05D002225 ORTHO05D002271 3.0e-06 56.2 27 85.2
MD01G1167800 Malus domestica HOM05D002225 ORTHO05D002271 3.0e-06 56.2 27 85.2
MD07G1233800 Malus domestica HOM05D002225 ORTHO05D002271 3.0e-06 56.2 27 85.2
Peaxi162Scf00167g01215 Petunia axillaris HOM05D002225 ORTHO05D002271 3.0e-06 56.2 27 85.2
MSTRG.27259 Avicennia marina HOM05D002225 ORTHO05D002271 3.9e-06 55.8 27 92.6
Ciclev10031722m.g Citrus clementina HOM05D002225 ORTHO05D002271 3.9e-06 55.8 27 81.5
MELO3C018256.2 Cucumis melo HOM05D002225 ORTHO05D002271 3.9e-06 55.8 29 79.3
DCAR_018038 Daucus carota HOM05D002225 ORTHO05D002271 3.9e-06 55.8 27 81.5
Dinv34486 Davidia involucrata HOM05D002225 ORTHO05D002271 3.9e-06 55.8 27 88.9
PSO384G2911 Papaver somniferum HOM05D002225 ORTHO05D002271 3.9e-06 55.8 29 79.3
TWI73G0482 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 3.9e-06 55.8 26 88.5
vmacro06892 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 3.9e-06 55.8 26 84.6
Cfa001208 Carpinus fangiana HOM05D002225 ORTHO05D002271 5.0e-06 55.5 29 79.3
Dinv21847 Davidia involucrata HOM05D002225 ORTHO05D002271 5.0e-06 55.5 29 82.8
PSO339G3502 Papaver somniferum HOM05D002225 ORTHO05D002271 5.0e-06 55.5 29 79.3
Sabra19G0073700 Salix brachista HOM05D002225 ORTHO05D002271 5.0e-06 55.5 27 81.5
GSVIVG01032672001 Vitis vinifera HOM05D002225 ORTHO05D002271 5.0e-06 55.5 27 81.5
CiPaw.02G198900 Carya illinoinensis HOM05D002225 ORTHO05D002271 6.6e-06 55.1 27 85.2
Migut.F01243 Erythranthe guttata HOM05D002225 ORTHO05D002271 6.6e-06 55.1 27 88.9
Eucgr.J00112 Eucalyptus grandis HOM05D002225 ORTHO05D002271 6.6e-06 55.1 27 81.5
Glyma.04G222600 Glycine max HOM05D002225 ORTHO05D002271 6.6e-06 55.1 27 85.2
Lsat_1_v5_gn_9_60121 Lactuca sativa HOM05D002225 ORTHO05D002271 6.6e-06 55.1 27 81.5
Aqoxy4G02423 Aquilegia oxysepala HOM05D002225 ORTHO05D002271 8.6e-06 54.7 43 55.8
CsaV3_3G044610 Cucumis sativus L. HOM05D002225 ORTHO05D002271 8.6e-06 54.7 29 75.9
Prupe.2G264200 Prunus persica HOM05D002225 ORTHO05D002271 8.6e-06 54.7 27 81.5


User provided reference genes

Program Settings