Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 9.9e-173 610.1 336 100.0
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.9e-108 396.0 346 68.8
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 5.0e-108 395.2 365 64.7
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.2e-107 392.1 368 63.3
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 8.3e-103 377.9 367 65.7
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.4e-102 377.1 361 64.5
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.1e-99 367.5 361 64.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.8e-98 362.8 365 62.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.1e-98 361.7 344 65.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.8e-97 360.1 372 61.6
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.3e-97 359.8 380 60.3
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.0e-97 359.0 344 65.1
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.0e-97 359.0 344 65.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 3.4e-96 355.9 371 60.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.8e-96 354.4 376 59.6
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.4e-94 349.7 366 61.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.4e-94 348.6 341 62.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.0e-94 348.2 368 59.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 7.0e-94 348.2 347 63.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 6.0e-93 345.1 363 57.9
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-93 344.7 366 61.2
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.0e-92 344.4 349 63.6
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.0e-92 344.4 367 59.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-92 343.6 378 58.7
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.5e-91 340.5 369 58.5
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.9e-91 340.1 378 60.1
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.3e-91 339.0 338 61.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.8e-90 336.3 343 61.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.0e-89 332.4 350 58.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 8.9e-89 331.3 369 56.4
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-88 330.1 376 58.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.6e-88 329.7 371 54.2
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.3e-87 327.4 375 59.2
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.7e-87 327.0 377 56.8
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 5.4e-86 322.0 394 57.4
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.2e-86 321.2 421 51.8
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.7e-85 319.7 397 51.4
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 2.7e-85 319.7 366 54.1
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.5e-85 319.3 375 55.7
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 7.8e-85 318.2 364 56.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 7.8e-85 318.2 377 52.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 7.8e-85 318.2 443 49.4
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.0e-84 317.8 375 55.5
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.7e-84 317.0 397 53.1
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.0e-84 316.2 380 55.3
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 6.6e-84 315.1 380 54.5
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 8.6e-84 314.7 342 56.4
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.5e-83 313.9 357 55.5
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.9e-83 313.5 375 55.7
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.3e-83 311.6 398 52.3
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.3e-83 311.6 369 55.8
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.2e-82 310.8 382 54.5
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-82 310.8 382 54.5
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.6e-82 310.5 342 57.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.7e-82 308.9 357 57.1
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.8e-81 307.0 387 51.9
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 3.1e-81 306.2 386 50.8
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.1e-81 306.2 362 55.2
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 4.0e-81 305.8 340 57.1
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.9e-81 304.7 330 60.6
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 8.9e-81 304.7 299 61.9
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.2e-80 304.3 402 51.2
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.5e-80 303.9 379 54.1
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.5e-80 303.9 278 66.2
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.0e-80 303.5 302 61.3
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.6e-80 303.1 324 58.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 3.4e-80 302.8 374 50.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 7.5e-80 301.6 368 53.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.7e-79 300.4 302 60.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.9e-79 298.9 406 50.2
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 4.9e-79 298.9 367 52.0
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.2e-78 296.2 428 48.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 4.1e-78 295.8 372 54.8
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.5e-77 292.7 333 57.7
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.8e-77 291.6 381 53.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.9e-76 289.3 335 54.3
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.1e-76 288.9 373 50.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.5e-75 287.3 370 54.1
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.8e-73 280.4 368 51.9
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.4e-72 276.2 336 54.8
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 3.4e-72 276.2 374 50.3
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 3.4e-72 276.2 358 50.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.2e-71 273.5 386 51.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.9e-71 273.1 366 50.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.1e-70 271.2 322 55.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.2e-70 269.6 415 45.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.4e-70 268.9 362 49.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 6.6e-68 261.9 372 47.8
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.3e-66 257.7 312 53.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.6e-66 256.1 461 42.3
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.4e-65 254.2 375 48.5
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 4.0e-65 252.7 442 44.1
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 6.9e-65 251.9 460 41.5
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.2e-64 251.1 460 42.8
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.6e-64 250.0 455 42.6
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.6e-64 250.0 455 42.6
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 9.9e-64 248.1 460 42.8
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 4.9e-63 245.7 464 42.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 6.4e-63 245.4 458 42.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.1e-62 244.6 462 42.4
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.4e-62 244.2 389 45.5
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.7e-61 240.0 493 39.8
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.7e-61 240.0 493 39.8
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.5e-61 239.6 358 46.6
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 5.1e-60 235.7 489 39.1
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 8.7e-60 235.0 474 39.5
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 9.6e-59 231.5 332 49.4
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.8e-58 229.9 334 46.1
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.2e-56 224.6 482 40.0
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.3e-55 221.1 326 48.2
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.2e-55 220.3 339 45.1
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 5.4e-54 215.7 297 49.5
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 7.9e-53 211.8 429 38.9
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.0e-52 211.5 387 43.9
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.9e-51 207.2 362 45.3
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 4.3e-51 206.1 394 40.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 5.6e-51 205.7 387 42.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.8e-50 203.4 370 44.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.4e-49 200.3 273 49.1
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 8.4e-47 191.8 341 42.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.1e-46 191.4 260 49.6
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 2.5e-46 190.3 279 50.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.3e-43 179.9 315 43.2
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.3e-43 179.5 434 36.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 6.2e-42 175.6 130 72.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 2.6e-32 143.7 345 42.9
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.9e-32 142.5 315 39.0
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.2e-30 136.7 157 56.1
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.0e-27 127.5 76 86.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 7.4e-27 125.6 290 40.0
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 5.3e-25 119.4 319 36.4
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.3e-23 114.8 75 76.0
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.5e-23 112.1 82 72.0
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 7.2e-22 109.0 147 44.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.4e-20 104.8 329 35.3
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-18 97.1 68 73.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.1e-17 93.2 68 69.1
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.1e-17 93.2 203 37.9
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 2.6e-16 90.5 68 70.6
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 3.5e-16 90.1 68 69.1
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.2e-15 87.4 67 70.1
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.1e-14 85.1 165 43.6
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.9e-14 84.3 120 45.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.2e-14 82.4 53 77.4
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 3.3e-11 73.6 80 46.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.8e-09 67.8 168 36.3
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.5e-08 63.5 36 83.3
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.2e-06 57.0 50 64.0
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-06 56.6 50 64.0
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-06 56.6 50 64.0
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-06 56.6 50 64.0
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-06 56.6 50 64.0
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 9.4e-06 55.5 50 62.0


User provided reference genes

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