Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.5e-144 513.8 261 100.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 3.1e-121 438.7 223 99.6
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.7e-24 116.7 167 46.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.8e-20 104.0 135 46.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-20 103.6 140 45.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.0e-20 102.8 130 48.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.0e-20 102.8 143 44.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 8.9e-20 101.7 135 45.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-19 100.9 131 48.1
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.6e-19 100.1 166 42.2
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.7e-18 97.4 143 44.1
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.9e-18 96.7 115 47.8
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.7e-18 96.3 180 39.4
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 6.4e-18 95.5 180 36.1
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.4e-18 95.5 190 40.5
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 8.3e-18 95.1 161 41.6
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.4e-17 93.6 129 46.5
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.4e-17 93.6 128 46.1
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 2.4e-17 93.6 120 45.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-17 93.6 151 41.1
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.2e-17 93.2 132 45.5
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.2e-17 93.2 123 48.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.1e-17 92.8 162 41.4
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 5.4e-17 92.4 155 40.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 7.1e-17 92.0 123 43.1
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 9.2e-17 91.7 121 48.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.2e-17 91.7 121 48.8
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-16 91.3 119 46.2
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.1e-16 90.5 166 40.4
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-16 90.1 118 50.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 7.8e-16 88.6 170 41.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 7.8e-16 88.6 136 44.9
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.0e-15 88.2 134 43.3
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.3e-15 87.8 119 45.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.7e-15 87.4 118 45.8
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.3e-15 87.0 201 37.3
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 3.0e-15 86.7 172 39.0
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.9e-15 86.3 120 45.0
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 5.1e-15 85.9 179 36.9
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.6e-15 85.5 162 41.4
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.6e-15 85.1 150 42.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.1e-14 84.7 157 39.5
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.5e-14 84.3 214 37.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.5e-14 83.6 118 41.5
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 2.5e-14 83.6 171 37.4
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.5e-14 83.6 160 39.4
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 3.3e-14 83.2 121 46.3
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.3e-14 82.8 144 41.7
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.3e-14 82.8 128 46.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 4.3e-14 82.8 111 42.3
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 5.6e-14 82.4 130 40.8
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 7.3e-14 82.0 163 41.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 7.3e-14 82.0 141 40.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 9.5e-14 81.6 132 42.4
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 9.5e-14 81.6 130 40.0
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 9.5e-14 81.6 120 43.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.2e-13 81.3 112 43.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-13 81.3 112 46.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-13 81.3 223 35.9
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.6e-13 80.9 103 43.7
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.1e-13 80.5 159 39.6
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 3.6e-13 79.7 111 44.1
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.6e-13 79.7 190 36.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.6e-13 79.7 190 36.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.6e-13 79.7 243 29.6
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.7e-13 79.3 188 37.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 4.7e-13 79.3 164 39.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.7e-13 79.3 125 45.6
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 6.2e-13 79.0 118 44.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.1e-12 78.2 73 53.4
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-12 77.8 188 37.8
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-12 77.8 188 37.8
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-12 77.8 128 44.5
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-12 77.4 148 39.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.8e-12 77.4 118 42.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.3e-12 77.0 145 39.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.3e-12 77.0 119 42.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.3e-12 77.0 162 35.2
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.1e-12 76.6 86 47.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 4.0e-12 76.3 130 43.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 4.0e-12 76.3 71 57.7
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.2e-12 75.9 128 40.6
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 5.2e-12 75.9 94 45.7
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.8e-12 75.5 152 35.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-11 74.7 113 46.0
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.2e-11 74.7 115 41.7
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.5e-11 74.3 97 47.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-11 74.3 115 42.6
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.0e-11 73.9 179 35.8
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.0e-11 73.9 68 54.4
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.6e-11 73.6 83 50.6
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 2.6e-11 73.6 103 41.7
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.4e-11 73.2 76 52.6
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.8e-11 72.4 113 45.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.9e-11 71.6 212 33.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 9.9e-11 71.6 119 42.9
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.3e-10 71.2 150 36.7
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.3e-10 71.2 107 43.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.2e-10 70.5 115 43.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.2e-10 70.5 115 42.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.9e-10 70.1 120 35.8
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.8e-10 69.7 107 43.9
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.8e-10 69.7 64 54.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.8e-10 69.7 64 54.7
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.8e-10 69.7 75 50.7
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.8e-10 69.7 120 37.5
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.8e-10 69.7 138 39.1
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.9e-10 69.3 98 39.8
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 6.4e-10 68.9 72 51.4
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.4e-09 67.8 89 42.7
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.9e-09 67.4 53 62.3
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.4e-09 67.0 48 60.4
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 2.4e-09 67.0 142 38.0
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.4e-09 67.0 201 32.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.2e-09 66.6 148 35.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 5.4e-09 65.9 161 36.6
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 5.4e-09 65.9 118 37.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 7.1e-09 65.5 57 56.1
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 9.2e-09 65.1 134 38.8
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.2e-09 65.1 157 33.1
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-08 64.7 158 34.2
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 1.6e-08 64.3 95 41.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-08 64.3 167 35.3
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.7e-08 63.5 159 37.1
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 3.5e-08 63.2 73 46.6
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.6e-08 62.8 175 33.1
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.6e-08 62.8 157 33.8
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.0e-08 62.4 159 34.0
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.0e-08 62.4 139 36.7
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 7.8e-08 62.0 125 37.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.0e-07 61.6 159 33.3
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.0e-07 61.6 109 40.4
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-07 61.2 178 32.0
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 3.9e-07 59.7 110 38.2
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.1e-07 59.3 144 32.6
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 6.6e-07 58.9 173 33.5
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 1.5e-06 57.8 125 36.8
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.5e-06 57.8 93 40.9
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.5e-06 57.8 93 40.9
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.5e-06 57.8 156 35.9
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 9.6e-06 55.1 165 33.3


User provided reference genes

Program Settings