Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.5e-219 765.8 365 100.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 4.7e-176 621.3 363 80.2
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.9e-170 602.1 366 77.9
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.2e-169 598.2 366 77.9
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.4e-167 593.2 366 75.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.6e-166 589.0 363 75.8
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.7e-165 585.1 364 75.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 4.8e-165 584.7 367 74.1
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 5.9e-163 577.8 368 73.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.6e-162 573.9 367 72.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 8.6e-162 573.9 367 72.8
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-161 573.2 367 71.9
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.5e-161 572.4 367 71.9
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.2e-161 571.6 363 73.8
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.8e-160 568.9 356 73.6
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 3.6e-160 568.5 363 72.2
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.3e-159 565.8 365 72.3
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.0e-159 565.5 457 63.0
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 2.0e-158 562.8 365 71.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.0e-158 562.8 365 72.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.4e-158 562.0 368 72.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.5e-158 560.8 366 71.9
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.7e-157 559.7 368 70.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.2e-157 559.3 359 71.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 4.9e-157 558.1 365 70.7
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 4.9e-157 558.1 368 71.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.3e-157 557.4 365 71.2
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 8.3e-157 557.4 365 71.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.3e-157 557.4 359 71.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-156 557.0 365 71.2
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-156 557.0 365 71.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.4e-156 556.6 365 71.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.8e-156 556.2 367 71.4
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.8e-156 556.2 365 70.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.4e-156 555.8 359 71.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 3.2e-156 555.4 355 73.2
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-155 552.4 364 71.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 2.7e-155 552.4 366 71.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 4.5e-155 551.6 366 70.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.0e-154 550.4 362 69.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 3.3e-153 545.4 368 68.8
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.1e-152 542.7 364 68.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 4.7e-152 541.6 362 68.2
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 6.1e-152 541.2 364 68.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.0e-151 540.4 365 68.2
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.0e-151 540.4 366 69.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 2.3e-151 539.3 363 68.0
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.1e-151 538.9 366 70.8
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 5.2e-151 538.1 364 70.6
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 8.9e-151 537.3 365 67.7
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.2e-150 537.0 361 68.4
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.5e-150 536.6 364 68.1
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.6e-150 535.8 365 67.4
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 4.4e-150 535.0 367 67.3
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.4e-150 535.0 315 76.2
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 7.5e-150 534.3 366 69.4
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.1e-148 530.4 363 65.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.4e-148 529.3 363 65.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 7.0e-148 527.7 367 67.8
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 7.0e-148 527.7 363 65.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 9.2e-148 527.3 363 65.6
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 9.2e-148 527.3 365 68.5
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.6e-147 526.6 354 70.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.0e-147 526.2 357 66.1
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.0e-147 526.2 361 65.9
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.5e-147 525.4 359 64.6
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.0e-147 524.6 364 68.4
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 6.0e-147 524.6 363 64.5
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 6.0e-147 524.6 345 69.3
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.0e-146 523.9 455 60.0
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.3e-146 523.5 357 65.8
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.3e-146 523.5 357 65.8
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-146 523.1 357 66.4
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.3e-146 522.7 358 67.9
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-146 522.7 345 69.9
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 3.9e-146 521.9 361 64.3
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-145 520.4 322 73.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.5e-145 519.2 359 65.7
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-145 519.2 322 73.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-145 518.8 322 73.3
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.3e-145 518.5 368 67.1
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 7.3e-145 517.7 358 68.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.8e-144 515.8 361 67.3
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.0e-144 514.2 369 64.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.8e-143 513.1 365 64.4
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.4e-142 508.8 368 65.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.5e-142 507.7 345 68.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 7.5e-142 507.7 356 67.7
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.3e-141 506.9 318 73.6
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 4.1e-140 501.9 371 63.6
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 7.8e-139 497.7 367 64.9
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.7e-138 496.5 394 61.2
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 3.0e-138 495.7 363 63.6
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.9e-138 495.4 363 64.2
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.1e-138 495.0 363 62.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.6e-138 494.6 359 63.0
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 6.6e-138 494.6 363 64.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.1e-136 489.6 363 62.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.7e-136 488.4 363 61.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 9.9e-134 480.7 361 60.1
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.2e-133 479.6 315 73.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.2e-131 473.8 338 64.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.6e-131 473.4 364 65.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.7e-131 472.6 364 63.5
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.3e-130 470.3 354 63.3
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.7e-128 461.8 363 61.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.7e-128 461.8 363 61.4
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.1e-127 460.7 361 59.8
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 5.4e-124 448.4 362 60.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-122 443.7 279 72.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-122 442.6 279 72.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-121 439.5 279 71.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 4.0e-119 432.2 271 72.3
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 7.1e-116 421.4 269 70.6
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.6e-112 409.1 338 58.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-111 407.5 320 65.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.6e-107 393.7 289 63.0
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.6e-105 385.2 293 58.7
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.1e-98 362.1 232 69.8
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-97 360.9 251 65.7
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.1e-95 352.8 364 46.7
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.1e-91 340.1 205 73.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.9e-91 338.2 234 65.8
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.8e-90 337.0 365 48.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 3.0e-90 336.3 237 66.2
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.9e-89 333.6 360 46.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 8.2e-88 328.2 268 58.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.1e-87 326.2 363 46.3
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 7.7e-86 321.6 368 46.2
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-85 319.7 207 66.7
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-82 310.5 337 48.7
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.8e-77 292.7 195 71.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.5e-76 288.9 184 71.2
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.3e-74 283.5 203 64.5
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.9e-70 268.9 207 61.4
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-64 251.1 155 75.5
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 4.8e-56 222.6 160 68.1
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.8e-55 220.7 246 45.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.0e-47 192.2 145 64.1
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.3e-40 171.4 229 42.4
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.8e-35 153.7 109 67.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.6e-33 147.1 109 65.1
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.6e-28 129.4 100 64.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 8.9e-26 122.1 99 60.6
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.0e-25 120.9 102 52.9
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.0e-13 80.5 131 34.4
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 5.4e-07 59.7 102 34.3


User provided reference genes

Program Settings