Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017812 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.4e-49 199.1 92 100.0
CSS0002781 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.2e-33 144.8 84 81.0
CSS0011674 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.2e-26 122.1 83 68.7
CSS0025077 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.8e-23 112.5 88 60.2
Rhsim11G0149500 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.0e-23 111.7 92 56.5
Rhsim12G0079800 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.8e-23 110.2 92 56.5
CSS0034647 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 7.5e-22 107.1 84 60.7
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.5e-22 107.1 92 54.3
Rhsim04G0047200 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-21 105.5 92 53.3
Rhsim01G0139300 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.8e-20 102.4 92 50.0
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.1e-20 101.7 92 54.3
Rhsim08G0178900 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.4e-20 100.9 92 51.1
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.0e-20 100.5 92 52.2
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-19 99.4 92 53.3
Rhsim09G0070000 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.2e-17 91.7 92 46.7
Rhsim10G0112100 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.2e-17 91.3 92 48.9
Rhsim02G0152800 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.5e-17 90.9 92 43.5
Rhsim03G0083500 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.5e-17 90.1 92 41.3
Rhsim03G0167500 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.5e-17 90.1 92 47.8
Rhsim08G0169600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-16 89.7 92 42.4
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 6.1e-16 87.4 86 46.5
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-15 86.7 92 40.2
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-15 86.3 92 44.6
Rhsim01G0140300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-15 85.9 91 46.2
RhsimUnG0224600 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.8e-15 85.9 83 49.4
Rhsim03G0080700 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.0e-15 85.1 92 40.2
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.0e-15 84.7 91 42.9
Rhsim01G0274800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-14 83.2 88 44.3
Rhsim02G0107700 Rhododendron simsii HOM05D000048 ORTHO05D000006 1.2e-14 83.2 91 41.8
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 1.5e-14 82.8 92 41.3
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 1.5e-14 82.8 89 44.9
Rhsim09G0064700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-14 82.4 92 41.3
Rhsim09G0065000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.0e-14 82.4 92 41.3
Rhsim01G0110800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.4e-14 81.6 92 39.1
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.4e-14 81.6 92 42.4
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 4.4e-14 81.3 91 44.0
Rhsim03G0009500 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.5e-14 80.5 92 43.5
Rhsim07G0114000 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.8e-14 80.1 92 41.3
Rhsim01G0092300 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.7e-13 79.3 89 43.8
Rhsim12G0088700 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.7e-13 79.3 92 42.4
Rhsim08G0131400 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-13 79.0 65 52.3
Rhsim11G0021500 Rhododendron simsii HOM05D002187 ORTHO05D002243 3.7e-13 78.2 89 42.7
Rhsim03G0108700 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.3e-13 77.4 91 44.0
Rhsim02G0177800 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.3e-13 77.0 81 45.7
Rhsim06G0096800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-12 76.6 92 40.2
Rhsim02G0229500 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-12 76.3 92 37.0
Rhsim01G0175200 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.1e-12 75.1 92 39.1
Rhsim01G0048000 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.4e-12 74.3 81 43.2
vmacro07385 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 1.2e-11 73.2 83 39.8
Rhsim02G0134700 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.7e-11 72.0 75 45.3
PSO765G0015 Papaver somniferum HOM05D000003 ORTHO05D000006 5.9e-11 70.9 91 37.4
RhsimUnG0155100 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.9e-11 70.9 80 37.5
PSO782G0225 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-10 68.2 90 33.3
PSO040G0023 Papaver somniferum HOM05D000003 ORTHO05D000006 6.6e-10 67.4 88 31.8
PSO675G0655 Papaver somniferum HOM05D000003 ORTHO05D000006 6.6e-10 67.4 90 34.4
Carub.0002s0960 Capsella rubella HOM05D000003 ORTHO05D000006 8.6e-10 67.0 87 40.2
CANSAT35G2060 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-09 66.6 85 37.6
Rhsim09G0083100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.9e-09 65.9 92 37.0
CANSAT56G0694 Cannabis sativa HOM05D000003 ORTHO05D000006 2.5e-09 65.5 86 33.7
PSO339G1594 Papaver somniferum HOM05D000003 ORTHO05D000006 3.3e-09 65.1 87 39.1
Rhsim08G0187900 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.3e-09 65.1 92 37.0
Rhsim11G0006400 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.3e-09 65.1 92 39.1
PSO675G7157 Papaver somniferum HOM05D000003 ORTHO05D000004 5.6e-09 64.3 85 37.6
RhsimUnG0081000 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.6e-09 64.3 69 39.1
Ah.10g031070 Amaranthus hybridus HOM05D000003 ORTHO05D000006 7.3e-09 63.9 90 33.3
Aqoxy1G03380 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.3e-09 63.9 89 34.8
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 7.3e-09 63.9 92 35.9
Rhsim02G0151600 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.3e-09 63.9 92 37.0
Rhsim09G0090900 Rhododendron simsii HOM05D000003 ORTHO05D000126 9.5e-09 63.5 46 60.9
Aa31sc1394G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-08 63.2 86 38.4
PSO111G0003 Papaver somniferum HOM05D000003 ORTHO05D000006 1.2e-08 63.2 90 27.8
BcaC03g15337 Brassica carinata HOM05D000003 ORTHO05D000006 1.6e-08 62.8 87 40.2
CANSAT78G0838 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-08 62.8 86 36.0
Rhsim05G0112800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-08 62.8 71 40.8
Rhsim05G0135000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.6e-08 62.8 69 36.2
TAR391G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.6e-08 62.8 88 36.4
BcaB07g32061 Brassica carinata HOM05D000003 ORTHO05D000006 2.1e-08 62.4 91 40.7
PSO210G0481 Papaver somniferum HOM05D000003 ORTHO05D000006 2.1e-08 62.4 84 32.1
PSO447G0142 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-08 62.4 55 47.3
PSO782G4220 Papaver somniferum HOM05D000003 ORTHO05D000004 2.8e-08 62.0 90 28.9
Rhsim08G0119400 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.8e-08 62.0 71 38.0
BcaB02g09878 Brassica carinata HOM05D000496 ORTHO05D000411 3.6e-08 61.6 87 37.9
CANSAT11G0839 Cannabis sativa HOM05D000003 ORTHO05D000006 3.6e-08 61.6 69 39.1
BcaB08g34848 Brassica carinata HOM05D000496 ORTHO05D000411 4.7e-08 61.2 87 36.8
PSO063G4704 Papaver somniferum HOM05D000003 ORTHO05D000006 4.7e-08 61.2 75 38.7
PSO170G3085 Papaver somniferum HOM05D000003 ORTHO05D000004 4.7e-08 61.2 86 33.7
PSO541G0393 Papaver somniferum HOM05D000003 ORTHO05D000006 6.1e-08 60.8 84 38.1
Rhsim06G0043400 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.1e-08 60.8 84 35.7
C06p01420 Brassica napus HOM05D000003 ORTHO05D000006 1.0e-07 60.1 90 36.7
BolC7t42143H Brassica oleracea HOM05D000003 ORTHO05D027524 1.0e-07 60.1 87 37.9
Atru.chr7.1973 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-07 59.7 91 34.1
Aqoxy1G02664 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.4e-07 59.7 88 33.0
vmacro05354 Vaccinium macrocarpon HOM05D002580 ORTHO05D002811 1.4e-07 59.7 76 35.5
Atru.chr5.2264 Acer truncatum HOM05D000003 ORTHO05D000006 1.8e-07 59.3 91 33.0
Aqoxy1G03976 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.8e-07 59.3 91 31.9
Dinv38129 Davidia involucrata HOM05D000003 ORTHO05D000006 1.8e-07 59.3 74 37.8
PSO675G2553 Papaver somniferum HOM05D000003 ORTHO05D000006 1.8e-07 59.3 84 39.3
TAR055G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.8e-07 59.3 88 35.2
BcaC08g46847 Brassica carinata HOM05D000496 ORTHO05D000411 2.3e-07 58.9 87 36.8
FvH4_5g27366 Fragaria vesca HOM05D000003 ORTHO05D000004 2.3e-07 58.9 91 29.7
PSO478G0027 Papaver somniferum HOM05D000003 ORTHO05D000006 2.3e-07 58.9 70 35.7
Rhsim05G0192100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.3e-07 58.9 58 46.6
Rhsim11G0048600 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.3e-07 58.9 58 48.3
Atru.chr6.1114 Acer truncatum HOM05D000003 ORTHO05D000124 3.0e-07 58.5 91 34.1
CiPaw.09G186400 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 88 37.5
PSO675G1004 Papaver somniferum HOM05D000003 ORTHO05D000006 3.0e-07 58.5 84 33.3
PSO675G6153 Papaver somniferum HOM05D000003 ORTHO05D000006 3.0e-07 58.5 92 30.4
CANSAT56G2496 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-07 58.2 92 34.8
CiPaw.16G004600 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.2e-07 57.8 88 38.6
FvH4_4g21422 Fragaria vesca HOM05D000003 ORTHO05D000006 5.2e-07 57.8 62 43.5
RcHm_v2.0_Chr5g0027881 Rosa chinensis HOM05D000003 ORTHO05D000004 5.2e-07 57.8 91 29.7
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 6.8e-07 57.4 49 53.1
QL08p033637 Quercus lobata HOM05D000003 ORTHO05D000006 6.8e-07 57.4 87 35.6
BcaB08g34387 Brassica carinata HOM05D000003 ORTHO05D000006 8.9e-07 57.0 91 36.3
BolC8t47400H Brassica oleracea HOM05D000003 ORTHO05D000006 8.9e-07 57.0 90 34.4
CANSAT78G1606 Cannabis sativa HOM05D000003 ORTHO05D000006 8.9e-07 57.0 69 39.1
PSO339G1304 Papaver somniferum HOM05D000003 ORTHO05D000006 8.9e-07 57.0 66 34.8
Rhsim02G0183800 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.9e-07 57.0 88 37.5
Rhsim03G0112800 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.9e-07 57.0 86 36.0
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-06 56.6 91 30.8
BcaC06g34875 Brassica carinata HOM05D000003 ORTHO05D000006 1.2e-06 56.6 72 37.5
CANSAT21G2014 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 56.6 87 33.3
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-06 56.6 91 30.8
Nn8g41018 Nelumbo nucifera HOM05D000003 ORTHO05D000006 1.2e-06 56.6 91 31.9
PSO063G2188 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 56.6 70 38.6
Aqoxy7G02756 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.5e-06 56.2 83 33.7
BcaB01g06142 Brassica carinata HOM05D000496 ORTHO05D000411 1.5e-06 56.2 86 36.0
CANSAT01G0357 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-06 56.2 76 39.5
CANSAT35G1852 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 56.2 90 33.3
BraA07t30522Z Brassica rapa HOM05D000003 ORTHO05D000006 2.0e-06 55.8 91 30.8
FvH4_6g23371 Fragaria vesca HOM05D000003 ORTHO05D000006 2.0e-06 55.8 80 33.8
PSO170G4923 Papaver somniferum HOM05D000003 ORTHO05D000006 2.0e-06 55.8 91 28.6
PSO384G1817 Papaver somniferum HOM05D000003 ORTHO05D000006 2.0e-06 55.8 70 32.9
Aqoxy3G02165 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.4e-06 55.1 86 30.2
CANSAT80G0112 Cannabis sativa HOM05D000003 ORTHO05D000006 3.4e-06 55.1 79 32.9
PSO017G2287 Papaver somniferum HOM05D000003 ORTHO05D000004 3.4e-06 55.1 74 28.4
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-06 54.7 91 31.9
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 54.7 87 34.5
CANSAT80G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 54.7 86 33.7
FvH4_5g31282 Fragaria vesca HOM05D000003 ORTHO05D000004 4.4e-06 54.7 88 30.7
PSO063G3784 Papaver somniferum HOM05D000003 ORTHO05D000006 4.4e-06 54.7 90 28.9
BcaC03g15116 Brassica carinata HOM05D000496 ORTHO05D000411 5.7e-06 54.3 84 35.7
BcaC07g36967 Brassica carinata HOM05D000496 ORTHO05D000411 5.7e-06 54.3 89 34.8
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-06 54.3 90 34.4
AUR62040900 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.7e-06 54.3 89 33.7
COL.COLO4_27142 Corchorus olitorius HOM05D000003 ORTHO05D000006 5.7e-06 54.3 88 31.8
PSO675G1492 Papaver somniferum HOM05D000003 ORTHO05D000006 5.7e-06 54.3 88 28.4
Aqoxy2G02194 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.5e-06 53.9 91 30.8
BcaB03g15672 Brassica carinata HOM05D000003 ORTHO05D000006 7.5e-06 53.9 84 38.1
BcaC09g47652 Brassica carinata HOM05D000003 ORTHO05D000006 7.5e-06 53.9 75 42.7
PSO017G2373 Papaver somniferum HOM05D000003 ORTHO05D000006 7.5e-06 53.9 91 24.2
PSO357G0328 Papaver somniferum HOM05D000003 ORTHO05D000006 7.5e-06 53.9 68 38.2
PSO782G0304 Papaver somniferum HOM05D000003 ORTHO05D000006 7.5e-06 53.9 55 43.6
Atru.chr13.2518 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-06 53.5 88 31.8
Aa31LG1G5100 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.8e-06 53.5 91 31.9
Aqoxy1G02620 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.8e-06 53.5 91 29.7
Aqoxy2G00806 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.8e-06 53.5 91 29.7
BcaC07g37007 Brassica carinata HOM05D000496 ORTHO05D021670 9.8e-06 53.5 66 43.9
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.8e-06 53.5 88 34.1
PSO675G8830 Papaver somniferum HOM05D000003 ORTHO05D000006 9.8e-06 53.5 79 31.6


User provided reference genes

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