Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 1.9e-232 808.9 428 100.0
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 2.9e-177 625.5 420 76.4
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 9.4e-168 594.0 419 74.0
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 1.4e-163 580.1 420 72.4
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 2.0e-146 523.1 422 63.5
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 1.3e-145 520.4 421 65.8
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 8.0e-143 511.1 421 66.3
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 2.0e-141 506.5 416 62.7
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 1.1e-139 500.7 419 62.1
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 2.7e-138 496.1 419 63.0
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 7.7e-138 494.6 425 61.6
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 1.0e-137 494.2 422 64.0
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 5.0e-137 491.9 385 64.2
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 1.9e-136 490.0 427 60.2
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 4.2e-136 488.8 420 60.7
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 1.0e-134 484.2 422 60.2
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 1.8e-134 483.4 421 60.8
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 3.0e-134 482.6 424 59.9
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 4.0e-134 482.3 418 59.3
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 5.2e-134 481.9 418 59.1
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 1.2e-133 480.7 421 60.1
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 1.5e-133 480.3 428 58.9
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 2.6e-133 479.6 419 58.9
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 4.4e-133 478.8 418 59.1
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 4.4e-133 478.8 420 59.3
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 9.8e-133 477.6 422 60.2
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 2.2e-132 476.5 421 61.5
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 8.3e-132 474.6 425 60.5
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 1.1e-131 474.2 418 60.0
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 1.8e-131 473.4 388 61.1
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 1.8e-131 473.4 420 58.6
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 7.8e-130 468.0 427 57.4
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 2.9e-129 466.1 430 57.2
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 8.6e-129 464.5 423 57.4
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 1.1e-128 464.2 424 58.0
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 1.9e-128 463.4 396 60.6
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 2.1e-127 459.9 418 56.7
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 1.0e-126 457.6 416 56.0
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 1.8e-126 456.8 388 59.8
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 2.3e-126 456.4 424 59.7
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 5.2e-126 455.3 428 55.8
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 1.5e-125 453.8 424 57.1
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 2.0e-125 453.4 421 55.6
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 2.9e-124 449.5 437 60.2
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 1.1e-123 447.6 429 55.9
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 1.9e-123 446.8 418 57.9
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 3.2e-123 446.0 442 54.1
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 7.0e-123 444.9 397 59.4
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 5.0e-121 438.7 476 50.6
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 6.6e-121 438.3 427 54.6
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 5.6e-120 435.3 435 56.6
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 2.8e-119 433.0 441 54.2
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 2.0e-117 426.8 425 55.3
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 1.3e-116 424.1 406 54.2
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 6.4e-116 421.8 422 54.0
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 1.9e-115 420.2 366 65.0
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 7.8e-114 414.8 409 52.1
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 1.3e-113 414.1 375 55.7
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 4.7e-111 405.6 429 50.8
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 1.8e-110 403.7 459 49.5
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 8.9e-110 401.4 432 49.8
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 8.9e-110 401.4 432 49.8
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 7.5e-109 398.3 424 54.2
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.3e-108 397.5 417 52.0
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 1.3e-108 397.5 389 56.3
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 3.7e-108 396.0 417 51.3
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 4.9e-108 395.6 422 53.1
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 4.9e-108 395.6 422 53.1
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 1.4e-107 394.0 382 54.5
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.1e-106 390.2 417 55.2
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 7.8e-106 388.3 417 54.9
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 2.1e-103 380.2 431 50.6
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 8.4e-100 368.2 376 51.3
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 9.2e-99 364.8 305 65.2
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 5.1e-97 359.0 307 61.2
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 1.6e-95 354.0 313 60.7
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 5.8e-93 345.5 310 59.0
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 1.3e-92 344.4 369 51.5
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 4.2e-91 339.3 304 59.9
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 1.7e-89 334.0 388 49.7
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 1.1e-88 331.3 349 52.4
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 1.6e-87 327.4 433 45.0
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 1.6e-87 327.4 307 58.6
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 7.9e-82 308.5 298 56.0
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 1.9e-80 303.9 297 53.2
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 2.5e-80 303.5 282 54.6
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 1.1e-78 298.1 317 50.5
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 1.0e-73 281.6 383 42.8
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 7.4e-72 275.4 585 32.5
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 6.1e-66 255.8 177 70.1
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 1.3e-65 254.6 180 66.7
QL10p037675 Quercus lobata HOM05D007044 ORTHO05D008981 1.3e-63 248.1 242 57.9
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 1.2e-61 241.5 177 70.1
Eucgr.I00024 Eucalyptus grandis HOM05D007044 ORTHO05D008981 2.6e-61 240.4 248 54.8
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 2.5e-59 233.8 177 63.8
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 1.0e-57 228.4 204 54.9
Glyma.10G176100 Glycine max HOM05D007044 ORTHO05D008981 3.8e-52 209.9 189 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 2.7e-50 203.8 251 45.8
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 3.9e-49 199.9 245 48.6
MELO3C033209.2 Cucumis melo HOM05D007044 ORTHO05D008981 2.3e-33 147.5 167 49.7
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 3.5e-29 133.7 480 26.0
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 3.5e-29 133.7 327 30.9
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 8.5e-28 129.0 135 50.4
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 2.5e-27 127.5 339 36.3
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 2.3e-25 120.9 121 52.1
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 4.0e-25 120.2 374 29.7
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 4.4e-24 116.7 172 36.6
CBR_g30110 Chara braunii HOM05D007044 ORTHO05D008981 2.7e-21 107.5 137 40.1
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 1.3e-20 105.1 229 34.5
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 2.6e-16 90.9 179 29.1
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 4.9e-15 86.7 55 70.9
Actinidia16039 Actinidia chinensis HOM05D007044 ORTHO05D008981 6.3e-15 86.3 160 43.8
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 1.1e-14 85.5 305 26.6
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 1.1e-14 85.5 174 29.9
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 7.0e-14 82.8 294 26.2
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 5.9e-13 79.7 178 28.7
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 1.7e-12 78.2 174 28.7
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 3.9e-12 77.0 418 22.5
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 4.7e-10 70.1 167 29.3
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.4e-09 68.6 190 23.7
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 1.8e-09 68.2 409 21.8
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 1.8e-09 68.2 164 29.3
Mapoly0065s0091 Marchantia polymorpha HOM05D005456 ORTHO05D006805 5.2e-09 66.6 176 27.3
SMO367G0558 Selaginella moellendorffii HOM05D005456 ORTHO05D006805 1.5e-08 65.1 154 27.3
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 7.5e-08 62.8 167 26.9
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 9.8e-08 62.4 305 24.6
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 9.8e-08 62.4 167 26.3
DCAR_030997 Daucus carota HOM05D005456 ORTHO05D006805 1.7e-07 61.6 173 27.2
Zm00001eb347700 Zea mays HOM05D001443 ORTHO05D001352 2.2e-07 61.2 66 48.5
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 3.7e-07 60.5 373 22.5
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 3.7e-07 60.5 373 22.8
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 4.9e-07 60.1 167 26.9
Cre16.g661350 Chlamydomonas reinhardtii HOM05D005456 ORTHO05D006805 6.4e-07 59.7 165 26.1
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 6.4e-07 59.7 195 26.2
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 6.4e-07 59.7 175 26.3
Sc04g0007920 Simmondsia chinensis HOM05D005456 ORTHO05D006805 6.4e-07 59.7 167 26.3
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 8.3e-07 59.3 167 26.3
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 8.3e-07 59.3 167 26.3
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 8.3e-07 59.3 186 24.2
ATR0564G531 Amborella trichopoda HOM05D005456 ORTHO05D006805 1.4e-06 58.5 175 25.7
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 1.4e-06 58.5 291 21.6
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 2.4e-06 57.8 167 28.7
Ciclev10031325m.g Citrus clementina HOM05D005456 ORTHO05D006805 2.4e-06 57.8 174 27.6
Lsat_1_v5_gn_3_51901 Lactuca sativa HOM05D005456 ORTHO05D006805 3.2e-06 57.4 169 24.9
Cfa008936 Carpinus fangiana HOM05D005456 ORTHO05D006805 4.1e-06 57.0 168 25.6
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 5.4e-06 56.6 167 26.9
CiPaw.05G130300 Carya illinoinensis HOM05D005456 ORTHO05D006805 5.4e-06 56.6 173 27.7
CBR_g3670 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-06 56.6 82 35.4
CBR_g780 Chara braunii HOM05D005456 ORTHO05D006805 7.0e-06 56.2 153 26.8
Cre12.g524500 Chlamydomonas reinhardtii HOM05D005656 ORTHO05D007094 9.2e-06 55.8 171 22.2
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 9.2e-06 55.8 171 27.5
Pp3c1_8530 Physcomitrium patens HOM05D005416 ORTHO05D007956 9.2e-06 55.8 302 24.2
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 9.2e-06 55.8 120 24.2
TAR622G0968 Trochodendron aralioides HOM05D005456 ORTHO05D006805 9.2e-06 55.8 171 26.3


User provided reference genes

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