Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 0.0e+00 1231.5 975 100.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 2.4e-155 553.9 987 51.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 8.3e-71 273.1 940 36.7
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.1e-69 268.5 944 40.8
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.1e-57 229.6 263 56.3
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.6e-56 224.9 114 100.0
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 9.9e-56 223.0 280 53.6
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.3e-52 211.8 315 48.3
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.3e-51 208.0 264 51.9
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 7.3e-51 206.8 164 65.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.8e-49 202.2 186 62.4
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.4e-49 201.8 930 37.1
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 4.0e-49 201.1 289 49.8
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 5.3e-49 200.7 214 59.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 5.3e-49 200.7 248 52.4
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.5e-48 199.1 230 57.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 3.4e-48 198.0 251 52.6
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.4e-48 198.0 204 57.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.5e-48 197.6 257 52.5
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.8e-48 197.2 268 50.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 5.8e-48 197.2 173 61.3
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.8e-48 197.2 182 61.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 7.6e-48 196.8 237 53.6
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 7.6e-48 196.8 287 49.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 9.9e-48 196.4 199 59.3
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.3e-47 196.1 301 45.8
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.7e-47 195.7 214 57.9
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.2e-47 195.3 287 48.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.2e-47 195.3 198 60.1
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.9e-47 194.9 202 56.4
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.9e-47 194.1 229 54.6
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.9e-47 194.1 180 59.4
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.4e-47 193.7 214 55.6
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 6.4e-47 193.7 273 47.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.4e-47 193.7 222 55.0
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 8.4e-47 193.4 169 63.3
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.2e-46 191.4 244 51.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 4.2e-46 191.0 249 52.2
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 5.4e-46 190.7 207 58.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.1e-46 190.3 213 54.5
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 9.3e-46 189.9 280 48.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 9.3e-46 189.9 307 49.2
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.1e-45 188.7 266 50.0
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.1e-45 188.7 274 47.8
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.1e-45 188.7 274 47.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 2.7e-45 188.3 234 53.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.6e-45 187.6 314 46.2
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.0e-45 187.2 233 52.4
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.0e-45 187.2 206 55.3
vmacro00641 Vaccinium macrocarpon HOM05D009134 ORTHO05D011284 6.0e-45 187.2 346 46.0
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.0e-44 186.4 210 54.3
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.3e-44 186.0 265 49.1
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-44 186.0 205 55.1
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.8e-44 185.7 257 51.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.3e-44 185.3 153 68.0
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.3e-44 185.3 153 66.0
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.0e-44 184.9 153 67.3
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.0e-44 184.9 895 29.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.0e-44 184.9 240 51.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.1e-44 184.1 205 54.6
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.1e-44 184.1 153 68.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.7e-44 183.7 224 51.8
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.7e-44 183.7 222 54.5
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 8.7e-44 183.3 288 48.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-43 183.0 212 54.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.1e-43 183.0 153 64.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.5e-43 181.8 246 46.3
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-43 181.8 246 46.3
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.5e-43 181.8 274 48.2
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.3e-43 181.4 152 67.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.3e-43 181.0 128 74.2
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.6e-43 180.6 205 53.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.6e-43 180.6 205 53.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 9.6e-43 179.9 307 45.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.3e-42 179.5 209 53.6
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.1e-42 178.7 209 53.1
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.8e-42 178.3 244 46.7
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.8e-42 178.3 205 51.7
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.8e-42 178.3 274 46.0
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.2e-42 177.2 227 48.5
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 6.2e-42 177.2 312 44.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.0e-41 174.5 181 58.6
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 5.3e-41 174.1 103 84.5
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 5.3e-41 174.1 145 65.5
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.3e-41 174.1 114 78.9
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 6.9e-41 173.7 248 49.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 9.0e-41 173.3 287 45.6
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.5e-40 172.6 153 65.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.0e-40 172.2 208 50.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.6e-40 171.8 208 50.5
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 9.9e-40 169.9 211 51.7
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.7e-39 169.1 145 64.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.9e-39 168.3 153 64.1
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 8.4e-39 166.8 1036 36.9
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.2e-38 164.9 211 52.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 7.1e-38 163.7 134 67.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.2e-37 162.9 144 61.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.2e-37 162.9 140 64.3
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.5e-37 161.4 114 73.7
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-37 161.4 112 73.2
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.6e-37 161.0 110 73.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.6e-37 161.0 109 77.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.9e-37 160.2 210 49.5
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.8e-36 159.1 214 48.1
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-36 159.1 331 39.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.9e-36 157.9 998 30.7
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 8.7e-36 156.8 105 75.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 8.7e-36 156.8 112 71.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.5e-35 156.0 293 41.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.9e-35 155.6 142 56.3
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.5e-35 155.2 328 37.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 9.6e-35 153.3 141 57.4
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 8.2e-34 150.2 142 55.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 4.9e-31 141.0 172 55.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-29 135.6 133 60.9
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.7e-29 135.2 139 55.4
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.7e-29 135.2 186 46.8
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 7.9e-29 133.7 94 73.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.8e-28 132.5 278 40.6
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.3e-28 132.1 92 70.7
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.3e-28 132.1 99 68.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.7e-28 130.2 140 53.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.7e-28 130.2 140 53.6
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.3e-27 128.3 82 76.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.3e-26 126.3 217 45.6
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 6.3e-26 124.0 119 59.7
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.4e-25 122.1 274 37.6
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.5e-24 119.4 105 62.9
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.4e-24 118.2 107 62.6
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.0e-23 116.7 105 57.1
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-23 116.7 102 63.7
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-23 115.9 105 60.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.7e-23 115.9 109 56.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.5e-23 113.6 107 59.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.4e-22 112.8 109 55.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.9e-22 112.5 102 56.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.5e-22 112.1 108 55.6
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 7.2e-22 110.5 109 54.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 9.4e-22 110.2 110 54.5
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 109.8 105 55.2
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.6e-21 109.4 108 53.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.1e-21 109.0 103 54.4
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.1e-21 109.0 110 53.6
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.6e-21 107.8 142 47.2
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.1e-21 107.5 145 47.6
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.9e-20 104.8 95 63.2
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 6.9e-17 94.0 103 48.5
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.0e-16 92.4 170 39.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.9e-16 90.9 110 48.2
Cfa013242 Carpinus fangiana HOM05D063909 ORTHO05D004564 1.1e-14 86.7 324 32.7
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.2e-14 85.1 172 36.6
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 9.4e-14 83.6 107 46.7
TAR626G1378 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.6e-13 82.8 341 30.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.7e-13 82.0 106 41.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.7e-13 81.3 47 85.1
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.7e-13 81.3 179 38.5
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 6.1e-13 80.9 804 33.2
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 7.9e-13 80.5 76 60.5
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 7.9e-13 80.5 141 35.5
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 7.9e-13 80.5 57 70.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-12 79.7 54 72.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.9e-12 78.2 89 56.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.5e-11 76.3 68 57.4
Oeu007489.1 Olea europaea HOM05D064875 ORTHO05D004564 5.9e-08 64.3 365 36.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.7e-08 63.9 62 54.8
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.3e-07 63.2 140 40.7
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.1e-06 60.1 65 49.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.2e-06 58.2 900 32.9


User provided reference genes

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