Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.3e-66 256.1 123 100.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 4.7e-56 221.1 123 82.1
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.1e-55 219.9 123 82.9
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 1.8e-55 219.2 123 82.9
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.4e-55 218.8 123 82.1
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 9.0e-55 216.9 123 81.3
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 9.0e-55 216.9 123 81.3
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.2e-54 216.5 123 81.3
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.2e-54 216.5 123 78.9
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.0e-54 215.7 122 81.1
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 2.0e-54 215.7 123 81.3
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 80.5
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.4e-54 214.5 123 78.9
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 5.8e-54 214.2 123 79.7
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 9.9e-54 213.4 123 80.5
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 9.9e-54 213.4 123 78.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 9.9e-54 213.4 123 78.0
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.3e-53 213.0 124 80.6
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 79.7
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-53 213.0 122 78.7
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 79.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 78.9
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 78.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 77.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 2.2e-53 212.2 123 78.0
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 2.9e-53 211.8 123 78.0
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.8e-53 211.5 123 79.7
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 4.9e-53 211.1 121 81.0
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 79.7
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.4e-53 210.7 123 78.0
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 6.4e-53 210.7 123 77.2
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 8.4e-53 210.3 123 79.7
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 8.4e-53 210.3 123 78.9
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 77.2
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 78.0
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 78.9
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-52 209.5 124 78.2
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.4e-52 209.5 124 79.0
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.4e-52 208.8 123 74.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.4e-52 208.8 125 80.8
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 78.0
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 78.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 5.4e-52 207.6 123 78.9
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 7.1e-52 207.2 124 77.4
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 7.1e-52 207.2 122 75.4
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 78.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 9.3e-52 206.8 124 76.6
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 76.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 77.2
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 76.4
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 76.4
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.1e-51 205.7 121 76.9
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 3.5e-51 204.9 123 78.0
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 3.5e-51 204.9 123 78.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 4.6e-51 204.5 124 75.8
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 4.6e-51 204.5 123 77.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 6.0e-51 204.1 123 75.6
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 75.6
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 77.2
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 75.6
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 77.2
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 76.4
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.3e-50 203.0 124 75.8
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.3e-50 203.0 121 73.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.7e-50 202.6 116 80.2
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.7e-50 202.6 123 75.6
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.7e-50 202.6 121 75.2
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 74.8
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 76.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.9e-50 201.4 125 76.8
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 74.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 6.6e-50 200.7 126 76.2
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 6.6e-50 200.7 126 76.2
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 6.6e-50 200.7 123 74.8
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 6.6e-50 200.7 123 74.8
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 8.7e-50 200.3 116 77.6
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 8.7e-50 200.3 126 77.0
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 74.8
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 73.2
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.9e-49 199.1 126 75.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 75.8
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.5e-49 198.7 125 76.0
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.5e-49 198.7 125 76.0
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 72.6
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.3e-49 198.4 125 75.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 71.5
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 4.3e-49 198.0 125 76.0
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 5.6e-49 197.6 123 75.6
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 7.3e-49 197.2 124 76.6
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 9.6e-49 196.8 125 76.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 9.6e-49 196.8 125 75.2
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 75.2
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 71.5
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 75.2
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 116 77.6
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 70.7
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 71.5
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.8e-48 195.3 124 71.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 74.4
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 6.2e-48 194.1 123 71.5
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 6.2e-48 194.1 125 74.4
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 8.1e-48 193.7 129 72.1
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 8.1e-48 193.7 125 74.4
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.1e-47 193.4 125 74.4
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 69.9
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 1.4e-47 193.0 123 71.5
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.8e-47 192.6 122 72.1
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.4e-47 192.2 124 75.8
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.4e-47 192.2 123 71.5
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 2.4e-47 192.2 123 69.1
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.0e-47 191.4 124 73.4
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 5.3e-47 191.0 128 71.1
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 5.3e-47 191.0 128 71.1
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 6.9e-47 190.7 126 73.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.2e-46 189.9 127 70.1
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.2e-46 189.9 127 70.1
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.5e-46 189.5 125 70.4
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.5e-46 189.5 125 72.0
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 2.0e-46 189.1 121 73.6
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 4.5e-46 188.0 123 68.3
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 68.3
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 7.6e-46 187.2 127 69.3
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 7.6e-46 187.2 121 71.9
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.3e-45 186.4 123 69.9
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.7e-45 186.0 123 68.3
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.2e-45 185.7 125 71.2
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 2.2e-45 185.7 115 74.8
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.2e-45 185.7 123 69.1
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.2e-45 185.7 125 71.2
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 2.9e-45 185.3 118 71.2
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 70.4
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 6.4e-45 184.1 125 70.4
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 71.2
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 70.4
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.9e-44 182.6 125 70.4
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.2e-44 181.8 125 69.6
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 4.2e-44 181.4 124 69.4
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.7e-43 178.7 116 69.0
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 3.5e-43 178.3 118 71.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.6e-43 177.9 122 68.9
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.6e-43 177.9 122 68.9
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 65.0
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.0e-42 176.8 114 71.9
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.3e-42 175.6 113 75.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.0e-42 175.3 122 68.0
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.7e-42 173.7 116 68.1
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.9e-41 172.6 122 66.4
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 61.8
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 67.5
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.6e-41 170.2 109 68.8
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.0e-38 162.5 122 64.8
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 4.5e-38 161.4 122 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 2.7e-35 152.1 123 57.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.7e-34 147.5 131 53.4
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.5e-33 146.4 106 63.2
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 2.5e-33 145.6 132 52.3
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.2e-30 136.7 122 52.5
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.6e-30 134.0 87 64.4
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.2e-29 132.5 134 50.0
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 2.7e-27 125.6 123 53.7
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.8e-26 122.9 101 59.4
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-24 116.7 122 49.2
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.8e-23 112.8 115 51.3
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 3.8e-21 105.1 123 45.5
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 6.5e-21 104.4 63 71.4
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 6.1e-19 97.8 68 61.8
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.8e-15 86.3 57 63.2
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 5.7e-09 64.7 39 66.7


User provided reference genes

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