Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.8e-157 557.4 299 100.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.4e-141 506.5 406 73.4
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.8e-110 402.5 303 72.9
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.5e-108 396.7 304 73.0
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.0e-108 396.4 298 73.8
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.4e-106 389.4 221 91.4
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 7.1e-106 387.9 309 69.9
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 2.7e-105 386.0 304 70.1
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.3e-104 382.9 223 86.1
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 2.3e-104 382.9 223 87.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 3.9e-104 382.1 299 70.6
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 3.9e-104 382.1 224 86.2
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.9e-104 382.1 224 86.2
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 5.1e-104 381.7 230 81.7
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 5.1e-104 381.7 250 82.0
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 6.7e-104 381.3 224 85.7
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.1e-103 380.6 300 70.0
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.3e-103 378.6 224 85.3
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 5.6e-103 378.3 255 79.2
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.6e-102 376.7 314 70.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.8e-102 375.9 224 85.7
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.7e-102 375.6 226 83.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.7e-102 375.6 300 69.3
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 4.8e-102 375.2 225 84.9
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 8.2e-102 374.4 225 84.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 8.2e-102 374.4 224 85.3
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 8.2e-102 374.4 290 71.0
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.1e-101 374.0 296 71.6
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.4e-101 373.6 228 82.5
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.1e-101 372.5 223 86.1
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 3.1e-101 372.5 223 86.1
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 6.9e-101 371.3 301 69.1
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 6.9e-101 371.3 223 84.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 6.9e-101 371.3 278 70.5
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 9.0e-101 370.9 225 84.4
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.2e-100 370.5 225 84.0
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 2.6e-100 369.4 213 87.3
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.6e-100 369.4 223 84.3
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 5.8e-100 368.2 213 87.3
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 5.8e-100 368.2 213 88.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 7.6e-100 367.9 228 81.6
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.3e-99 367.1 230 83.0
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.3e-99 367.1 299 68.6
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.3e-99 367.1 299 68.6
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.7e-99 366.7 225 83.1
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 8.4e-99 364.4 226 84.5
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.4e-98 363.6 246 79.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.2e-98 362.5 213 85.4
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 4.2e-98 362.1 295 67.1
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 5.5e-98 361.7 232 81.0
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.1e-98 361.3 240 76.2
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 7.1e-98 361.3 222 83.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 7.1e-98 361.3 245 74.7
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 9.3e-98 360.9 254 80.3
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.2e-97 360.5 221 83.7
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.2e-97 360.5 197 93.9
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.1e-97 359.8 197 92.4
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 3.5e-97 359.0 215 85.1
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 4.6e-97 358.6 209 87.1
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 6.0e-97 358.2 236 80.9
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 7.9e-97 357.8 235 79.1
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.8e-96 356.7 223 81.2
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.8e-96 356.7 233 78.1
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.8e-96 356.7 213 84.0
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.3e-96 356.3 237 79.7
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 3.9e-96 355.5 223 81.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 5.1e-96 355.1 235 80.4
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 8.7e-96 354.4 233 79.4
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.5e-95 353.6 215 83.3
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.9e-95 353.2 304 69.4
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.9e-95 353.2 204 87.7
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.3e-95 352.1 302 66.2
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 5.7e-95 351.7 231 79.7
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 5.7e-95 351.7 220 81.4
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 5.7e-95 351.7 213 83.6
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.7e-94 349.0 213 83.1
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 8.2e-94 347.8 193 89.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.8e-93 346.7 195 89.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 9.0e-93 344.4 192 90.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.5e-92 343.6 204 84.8
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.6e-92 342.8 212 82.1
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 3.4e-92 342.4 204 84.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 3.4e-92 342.4 204 84.8
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.4e-92 342.4 195 85.6
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.9e-92 341.7 216 81.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 7.7e-92 341.3 216 80.6
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 7.7e-92 341.3 225 79.1
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.0e-91 340.9 216 81.0
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.7e-91 340.1 214 81.3
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 2.9e-91 339.3 216 81.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.9e-91 339.3 204 83.8
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 2.9e-91 339.3 213 82.2
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.8e-91 339.0 205 84.9
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 6.5e-91 338.2 217 80.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 8.5e-91 337.8 214 80.4
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.1e-90 337.4 303 64.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.1e-90 337.4 213 82.2
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.4e-90 337.0 300 66.3
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.2e-90 335.5 216 79.6
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.2e-89 334.0 300 63.7
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.6e-89 333.6 214 80.4
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.6e-89 333.6 185 89.2
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.7e-89 332.8 307 62.5
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.7e-89 332.8 219 78.1
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.5e-87 327.0 213 79.8
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 6.3e-86 321.6 201 82.1
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 4.1e-85 318.9 185 85.4
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.5e-84 317.0 184 84.2
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 7.7e-84 314.7 185 84.9
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.3e-83 313.9 205 78.0
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.0e-83 312.0 269 66.2
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.5e-83 311.2 245 68.6
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 9.4e-82 307.8 338 54.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.7e-81 305.4 209 79.9
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 3.0e-80 302.8 234 72.2
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.3e-77 292.0 157 94.3
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.0e-76 290.0 255 65.9
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.2e-73 280.8 199 74.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.2e-70 270.0 168 82.1
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 6.5e-67 258.5 151 87.4
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.6e-65 253.8 134 94.8
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 6.1e-65 251.9 160 76.9
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 2.8e-62 243.0 192 65.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 2.4e-61 240.0 133 91.7
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 5.9e-60 235.3 213 62.0
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.2e-59 233.4 160 70.6
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 8.5e-59 231.5 191 68.1
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 5.5e-58 228.8 201 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 4.9e-46 189.1 120 78.3
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 5.2e-40 169.1 201 50.7
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 6.8e-40 168.7 90 95.6
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 9.8e-39 164.9 89 92.1
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.6e-36 156.0 111 71.2
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.6e-35 151.8 189 47.6
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.5e-34 150.2 111 67.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 6.2e-25 119.0 78 74.4
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.2e-23 114.8 82 73.2
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 7.5e-23 112.1 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 2.8e-17 93.6 178 37.1
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 4.3e-10 69.7 90 44.4
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 3.6e-09 66.6 70 54.3


User provided reference genes

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