Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.3e-109 399.8 212 100.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.8e-80 301.6 212 77.4
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 2.1e-75 286.2 205 74.1
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 1.0e-74 283.9 212 71.7
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 1.8e-71 273.1 212 68.9
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 2.9e-69 265.8 212 67.9
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 3.5e-67 258.8 205 69.8
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 4.6e-67 258.5 203 70.0
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 4.3e-65 251.9 215 66.5
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 6.9e-63 244.6 217 64.1
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 9.0e-63 244.2 212 68.9
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.7e-61 240.0 194 70.1
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 3.8e-61 238.8 167 76.6
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.8e-61 238.8 191 71.2
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 1.1e-60 237.3 205 63.4
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.1e-60 237.3 214 68.2
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 1.9e-60 236.5 243 58.4
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 3.2e-60 235.7 212 67.0
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 4.2e-60 235.3 180 72.8
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 7.2e-60 234.6 181 72.9
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 7.2e-60 234.6 188 72.3
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 1.2e-59 233.8 209 63.2
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.1e-59 233.0 216 63.0
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.5e-59 232.3 213 63.8
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 6.1e-59 231.5 208 65.4
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 6.1e-59 231.5 204 67.2
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.0e-58 230.7 164 77.4
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 2.3e-58 229.6 182 69.2
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 3.9e-58 228.8 208 64.4
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.9e-58 228.8 208 64.4
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 4.3e-57 225.3 205 64.4
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.7e-57 224.9 166 74.7
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 9.7e-57 224.2 180 71.7
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 1.3e-56 223.8 199 66.3
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.2e-56 223.0 166 73.5
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 3.7e-56 222.2 199 65.8
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.7e-56 222.2 149 81.2
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.3e-56 221.5 166 73.5
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 8.2e-56 221.1 180 65.6
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 1.1e-55 220.7 167 74.3
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 4.1e-55 218.8 192 64.6
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 5.3e-55 218.4 196 63.3
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 9.0e-55 217.6 201 61.7
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 1.2e-54 217.2 205 62.0
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 1.2e-54 217.2 206 61.7
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 3.4e-54 215.7 231 60.2
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 1.7e-53 213.4 204 60.3
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 8.5e-53 211.1 177 68.4
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.1e-52 210.7 204 61.8
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.4e-52 210.3 146 76.7
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 7.2e-52 208.0 194 64.9
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 7.2e-52 208.0 201 62.7
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 7.2e-52 208.0 201 62.2
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 1.6e-51 206.8 134 84.3
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 3.6e-51 205.7 210 60.5
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 4.6e-51 205.3 179 65.9
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 6.1e-51 204.9 135 81.5
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.4e-50 203.8 195 63.1
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-49 200.7 143 79.0
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.5e-49 200.3 157 73.9
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 1.5e-49 200.3 183 63.9
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 4.3e-49 198.7 160 66.9
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 7.4e-49 198.0 156 73.1
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 9.7e-49 197.6 112 92.9
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 2.8e-48 196.1 154 70.1
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-47 193.7 194 61.9
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 5.3e-47 191.8 111 90.1
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.2e-46 190.7 174 64.9
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 2.0e-46 189.9 176 61.9
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 3.4e-46 189.1 142 73.9
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 4.5e-46 188.7 106 92.5
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 4.5e-46 188.7 114 83.3
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.7e-45 186.8 122 77.9
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.7e-45 186.8 130 80.0
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 2.2e-45 186.4 122 78.7
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 3.8e-45 185.7 121 81.0
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 6.5e-45 184.9 121 80.2
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 3.2e-44 182.6 127 76.4
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 7.2e-44 181.4 139 72.7
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 9.4e-44 181.0 150 64.7
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.2e-43 180.6 120 75.8
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.1e-43 179.9 150 64.7
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 2.1e-43 179.9 143 66.4
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 2.7e-43 179.5 106 87.7
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.7e-43 179.5 145 71.0
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 7.9e-43 177.9 128 72.7
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.0e-42 177.6 107 83.2
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.0e-42 177.6 107 83.2
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.0e-42 177.6 107 83.2
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.0e-42 177.6 107 83.2
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 3.0e-42 176.0 125 74.4
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 6.7e-42 174.9 107 82.2
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.1e-41 174.1 123 73.2
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.5e-41 173.7 153 63.4
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 2.0e-41 173.3 107 81.3
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 3.3e-41 172.6 107 80.4
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 3.3e-41 172.6 107 80.4
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 3.3e-41 172.6 124 76.6
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 4.4e-41 172.2 201 55.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.4e-39 167.2 122 68.0
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.3e-37 160.6 129 63.6
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.9e-37 159.5 129 62.8
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 8.5e-37 157.9 135 62.2
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 4.2e-36 155.6 129 64.3
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 4.2e-36 155.6 122 68.9
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 4.0e-34 149.1 85 91.8
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 7.5e-33 144.8 86 88.4
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 1.7e-32 143.7 118 61.9
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 2.2e-32 143.3 186 48.9
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 9.1e-31 137.9 86 81.4
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 6.8e-26 121.7 144 45.1
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 2.0e-25 120.2 138 52.9
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 4.2e-20 102.4 53 94.3
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 1.0e-18 97.8 88 55.7
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 1.4e-15 87.4 104 46.2
Cc04_g06120 Coffea canephora HOM05D007021 ORTHO05D153017 1.1e-07 61.2 96 39.6


User provided reference genes

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