Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.2e-108 395.6 194 100.0
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.5e-93 346.3 193 85.5
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.7e-87 326.2 191 81.7
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 4.2e-83 311.6 193 76.7
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 7.2e-83 310.8 191 77.0
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.0e-81 307.0 191 78.0
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 2.3e-81 305.8 191 79.1
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 5.7e-80 301.2 191 76.4
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.7e-79 298.5 191 76.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.7e-79 298.5 191 72.3
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 4.8e-79 298.1 191 75.4
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.1e-78 295.0 191 73.8
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 5.3e-78 294.7 191 72.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 9.1e-78 293.9 190 74.2
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.2e-77 293.5 191 73.8
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 2.6e-77 292.4 191 73.8
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 2.6e-77 292.4 191 73.8
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 5.9e-77 291.2 191 72.8
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 5.9e-77 291.2 189 71.4
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 2.9e-76 288.9 191 72.3
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 5.0e-76 288.1 191 69.6
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 5.0e-76 288.1 191 72.3
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 8.5e-76 287.3 195 72.8
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 3.2e-75 285.4 191 72.8
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 7.2e-75 284.3 220 66.4
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.6e-74 282.0 192 70.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.0e-73 280.4 197 71.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.3e-73 279.3 192 69.8
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 4.0e-73 278.5 191 70.7
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 4.0e-73 278.5 191 69.6
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.1e-72 276.9 192 69.3
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-72 276.6 191 67.5
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.5e-72 276.6 191 72.3
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 3.3e-72 275.4 191 70.7
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.7e-72 274.6 191 67.0
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.3e-71 273.5 191 70.7
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-71 272.3 191 68.6
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.8e-71 272.3 191 68.6
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 4.8e-71 271.6 191 67.5
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.8e-71 271.6 191 68.1
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 6.3e-71 271.2 191 69.1
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 6.3e-71 271.2 192 66.1
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.4e-70 270.0 192 69.3
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 9.1e-70 267.3 191 67.5
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.1e-70 267.3 192 67.2
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 9.1e-70 267.3 191 65.4
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.2e-69 266.9 191 65.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 3.5e-69 265.4 206 66.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 4.5e-69 265.0 191 64.9
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 5.9e-69 264.6 191 68.1
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.3e-68 263.5 191 64.9
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.7e-68 263.1 191 67.5
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 2.2e-68 262.7 191 66.5
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 5.0e-68 261.5 193 67.9
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 6.5e-68 261.2 192 64.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.9e-67 259.6 192 64.6
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 3.2e-67 258.8 192 67.2
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 4.2e-67 258.5 192 63.0
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.1e-66 256.1 181 67.4
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.1e-66 256.1 192 63.5
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 6.1e-66 254.6 191 63.9
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 3.0e-65 252.3 191 63.9
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 4.0e-65 251.9 191 66.0
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 5.2e-65 251.5 191 66.5
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.5e-64 250.0 191 65.4
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 2.6e-64 249.2 192 63.5
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.6e-64 249.2 191 66.0
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 4.4e-64 248.4 191 61.3
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.4e-64 248.4 192 63.5
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 9.8e-64 247.3 191 62.3
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 3.7e-63 245.4 191 60.2
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 4.8e-63 245.0 191 61.3
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 4.8e-63 245.0 192 63.5
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 6.3e-63 244.6 191 61.8
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 6.3e-63 244.6 191 60.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.4e-62 242.7 191 60.2
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 7.0e-62 241.1 193 59.6
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 2.7e-61 239.2 191 61.8
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 4.5e-61 238.4 240 52.5
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.0e-60 237.3 191 60.2
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 6.5e-60 234.6 175 65.1
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.2e-59 232.3 191 63.9
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 3.2e-59 232.3 193 62.2
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.3e-57 226.1 191 57.1
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 8.8e-57 224.2 192 56.2
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 3.4e-56 222.2 192 56.2
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 3.4e-56 222.2 192 56.2
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 7.5e-56 221.1 192 55.7
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 9.8e-56 220.7 192 55.7
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.9e-55 218.4 193 59.6
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 3.1e-54 215.7 192 57.3
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 7.0e-54 214.5 192 54.7
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 7.0e-54 214.5 191 53.9
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.5e-51 206.8 161 61.5
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 9.5e-51 204.1 196 53.1
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.6e-45 186.8 194 54.6
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 4.7e-42 175.3 195 45.6
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 4.7e-42 175.3 193 48.2
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.4e-40 168.7 146 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.9e-39 165.2 156 48.1
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 6.4e-39 164.9 111 68.5
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 1.4e-38 163.7 194 43.3
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.2e-38 161.0 130 60.0
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-37 159.8 135 58.5
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.7e-37 159.5 111 66.7
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-32 143.7 93 69.9
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.3e-31 140.6 193 43.0
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 2.7e-29 132.9 130 52.3
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.2e-26 121.7 148 46.6
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.8e-23 112.5 184 35.3
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-19 100.5 81 60.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 7.3e-19 98.2 65 64.6
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-18 97.1 77 55.8
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-16 90.5 57 68.4
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.3e-15 87.4 109 46.8
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 2.9e-15 86.3 55 69.1
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-14 83.6 158 37.3
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 3.0e-12 76.3 170 30.0
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 9.9e-08 61.2 54 53.7
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 3.8e-07 59.3 50 52.0


User provided reference genes

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