Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.1e-244 848.6 421 100.0
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 7.6e-239 830.1 421 98.3
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 6.0e-151 538.1 368 74.2
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.7e-121 440.3 379 60.4
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 6.5e-121 438.3 379 59.6
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.4e-115 420.6 377 59.2
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.0e-113 414.5 379 56.7
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 2.5e-112 409.8 383 55.4
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 8.8e-110 401.4 373 58.4
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.1e-109 401.0 372 55.9
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 5.7e-109 398.7 382 54.7
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 9.7e-109 397.9 381 53.5
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.1e-107 394.4 423 51.8
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 1.2e-106 391.0 381 55.1
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.2e-106 391.0 370 54.9
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 5.9e-106 388.7 378 54.8
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 2.2e-105 386.7 382 52.1
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.5e-105 384.8 377 51.5
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.9e-104 383.6 381 53.0
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 4.2e-104 382.5 377 50.7
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 9.4e-104 381.3 375 51.5
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 2.7e-103 379.8 404 51.0
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.4e-102 377.5 352 54.8
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.8e-102 377.1 377 50.1
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.9e-102 375.9 381 52.2
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.4e-101 372.5 352 54.0
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.3e-100 370.9 399 49.9
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.1e-99 365.9 352 53.1
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 2.2e-97 360.1 327 55.7
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.2e-95 354.4 359 50.4
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 2.6e-93 346.7 419 47.5
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 8.2e-92 341.7 375 47.2
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 1.2e-90 337.8 368 51.4
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 2.2e-89 333.6 368 49.7
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 2.5e-88 330.1 375 48.3
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 5.5e-88 328.9 359 49.6
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 6.1e-87 325.5 379 47.8
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 2.8e-84 316.6 301 56.1
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 6.3e-84 315.5 353 49.3
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.7e-81 307.4 379 44.6
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.5e-80 304.3 407 41.8
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 4.2e-80 302.8 377 43.0
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 6.1e-79 298.9 377 43.8
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.8e-78 297.4 410 42.2
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.2e-77 294.7 363 45.7
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 1.8e-75 287.3 248 60.1
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 4.5e-74 282.7 382 43.2
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.1e-72 278.1 377 42.7
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.5e-72 277.7 372 42.7
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 2.5e-72 276.9 376 41.8
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 4.3e-72 276.2 376 42.0
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 8.9e-70 268.5 368 41.6
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 1.5e-69 267.7 377 41.4
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 2.2e-68 263.8 375 41.6
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 2.9e-68 263.5 375 41.3
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 3.7e-68 263.1 375 41.1
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 1.1e-67 261.5 351 41.6
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 1.1e-67 261.5 351 41.6
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 1.1e-67 261.5 351 41.6
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 4.1e-67 259.6 242 57.0
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 1.7e-65 254.2 318 44.3
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 4.7e-63 246.1 297 44.4
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 8.9e-62 241.9 372 37.9
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.5e-61 241.1 375 37.9
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 3.0e-57 226.9 290 45.2
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 8.1e-55 218.8 356 35.1
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 1.4e-51 208.0 255 45.1
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 4.6e-50 203.0 244 45.9
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.1e-48 198.4 349 33.0
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 3.4e-45 186.8 376 33.8
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 6.4e-44 182.6 296 36.5
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 3.9e-41 173.3 291 36.4
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 5.1e-33 146.4 129 55.8
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.2e-29 135.2 89 68.5
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.3e-24 116.7 159 41.5
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 1.8e-22 111.3 249 29.3
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 6.0e-18 96.3 371 26.1
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.5e-16 90.9 55 67.3
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.6e-16 89.7 54 66.7
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 1.0e-12 79.0 52 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.9e-11 74.7 331 22.1
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 2.7e-10 70.9 113 33.6
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 3.1e-06 57.4 54 55.6


User provided reference genes

Program Settings