Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 7.3e-47 190.3 100 100.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 5.3e-29 131.0 97 67.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.4e-28 128.3 97 64.9
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 8.4e-27 123.6 97 60.8
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.6e-25 119.4 92 65.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.5e-25 118.2 98 62.2
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.5e-25 118.2 98 62.2
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.5e-25 118.2 98 62.2
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 6.0e-25 117.5 97 57.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.7e-24 115.9 98 62.2
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 3.0e-24 115.2 98 58.2
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 5.1e-24 114.4 97 56.7
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.6e-24 114.0 98 60.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-23 112.8 97 58.8
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.3e-23 111.7 97 59.8
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 5.6e-23 110.9 100 57.0
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.6e-23 110.2 107 57.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.6e-22 109.4 99 57.6
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.1e-22 109.0 98 58.2
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.6e-22 108.2 83 62.7
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.6e-22 108.2 95 58.9
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 6.2e-22 107.5 99 55.6
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 6.2e-22 107.5 96 57.3
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 6.2e-22 107.5 98 53.1
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 8.1e-22 107.1 82 59.8
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 8.1e-22 107.1 92 58.7
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.8e-21 105.9 91 58.2
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.4e-21 105.5 95 53.7
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.4e-21 105.5 95 58.9
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 4.0e-21 104.8 97 51.5
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 5.3e-21 104.4 97 53.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 5.3e-21 104.4 97 54.6
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 6.9e-21 104.0 96 55.2
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 9.0e-21 103.6 98 51.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 9.0e-21 103.6 98 51.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.0e-21 103.6 101 55.4
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 9.0e-21 103.6 101 55.4
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 9.0e-21 103.6 81 59.3
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.2e-20 103.2 98 54.1
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.5e-20 102.8 83 59.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.0e-20 102.4 101 54.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 3.4e-20 101.7 82 57.3
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.5e-20 101.3 100 52.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 7.6e-20 100.5 98 49.0
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.7e-19 99.4 100 53.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.2e-19 99.0 88 53.4
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.2e-19 99.0 97 55.7
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.2e-19 99.0 99 51.5
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.9e-19 98.6 97 52.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.9e-19 98.6 87 56.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 2.9e-19 98.6 93 51.6
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.9e-19 98.6 84 57.1
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.9e-19 98.6 97 51.5
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.9e-19 98.6 97 55.7
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 3.8e-19 98.2 100 47.0
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.8e-19 98.2 84 56.0
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 4.9e-19 97.8 86 50.0
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 4.9e-19 97.8 105 48.6
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 4.9e-19 97.8 97 52.6
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 4.9e-19 97.8 86 53.5
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 4.9e-19 97.8 97 55.7
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.9e-19 97.8 102 52.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 6.4e-19 97.4 99 55.6
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 6.4e-19 97.4 91 60.4
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 6.4e-19 97.4 80 61.2
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.4e-19 97.4 99 49.5
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 8.4e-19 97.1 84 54.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 8.4e-19 97.1 89 50.6
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.1e-18 96.7 66 60.6
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 93 50.5
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.9e-18 95.9 92 51.1
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 2.4e-18 95.5 92 46.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.2e-18 95.1 97 49.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 4.2e-18 94.7 91 47.3
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 5.4e-18 94.4 91 49.5
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 9.3e-18 93.6 81 51.9
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 9.3e-18 93.6 101 47.5
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 9.3e-18 93.6 99 54.5
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 9.3e-18 93.6 79 54.4
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.6e-17 92.8 97 49.5
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 2.1e-17 92.4 91 49.5
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 2.1e-17 92.4 83 51.8
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.7e-17 92.0 92 45.7
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.7e-17 92.0 92 45.7
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.5e-17 91.7 66 56.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 4.6e-17 91.3 96 50.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 6.0e-17 90.9 89 48.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 85 47.1
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.3e-16 89.7 105 42.9
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 3.0e-16 88.6 100 47.0
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 3.9e-16 88.2 93 44.1
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 3.9e-16 88.2 89 46.1
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 3.9e-16 88.2 89 46.1
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 3.9e-16 88.2 66 53.0
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 3.9e-16 88.2 89 46.1
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 3.9e-16 88.2 94 44.7
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 5.1e-16 87.8 91 45.1
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 6.7e-16 87.4 84 48.8
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.7e-16 87.4 92 47.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.1e-15 86.7 74 52.7
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-15 86.3 75 49.3
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.5e-15 85.5 90 48.9
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.5e-15 85.5 63 52.4
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 3.3e-15 85.1 97 47.4
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.3e-15 85.1 82 54.9
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.3e-15 84.7 91 49.5
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.6e-15 84.3 90 43.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.6e-15 84.3 90 44.4
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 9.6e-15 83.6 100 45.0
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.6e-14 82.8 99 49.5
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.8e-14 82.0 81 51.9
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 3.7e-14 81.6 85 51.8
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 6.2e-14 80.9 92 44.6
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 6.2e-14 80.9 68 55.9
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 8.1e-14 80.5 92 43.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 8.1e-14 80.5 66 53.0
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.1e-13 78.6 90 41.1
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.1e-13 78.6 52 63.5
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 3.1e-13 78.6 96 43.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.0e-12 75.9 91 41.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.6e-12 75.5 80 43.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 2.6e-12 75.5 90 42.2
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 2.6e-12 75.5 90 42.2
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.4e-12 75.1 90 42.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.5e-12 74.7 91 41.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.5e-12 74.7 97 44.3
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.8e-12 74.3 90 42.2
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.6e-12 73.9 97 44.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 7.6e-12 73.9 90 41.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 7.6e-12 73.9 90 41.1
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.7e-11 72.8 90 41.1
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.1e-10 70.1 97 43.3
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.0e-08 62.0 64 46.9
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.9e-08 61.6 86 37.2
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.1e-07 60.1 64 43.8
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.5e-07 59.7 91 38.5
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.3e-07 58.2 63 42.9


User provided reference genes

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