Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.3e-84 314.3 159 100.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.1e-68 261.9 172 79.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-67 259.2 159 84.3
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.3e-66 256.5 159 84.9
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 6.5e-66 254.2 159 83.6
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 6.5e-66 254.2 159 83.6
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.4e-65 250.4 159 82.4
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.2e-64 250.0 159 81.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-64 250.0 159 82.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.2e-64 250.0 159 82.4
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.1e-64 249.2 159 82.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.7e-64 248.8 159 81.8
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.7e-64 248.1 159 81.1
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 6.1e-64 247.7 159 81.1
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 6.1e-64 247.7 159 81.8
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 8.0e-64 247.3 159 81.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.0e-63 246.9 159 80.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.4e-63 246.5 159 80.5
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.8e-63 246.1 159 80.5
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.8e-63 246.1 159 81.1
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.8e-63 246.1 159 81.1
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.8e-63 246.1 159 81.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.8e-63 246.1 159 79.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.3e-63 245.7 159 79.9
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 3.0e-63 245.4 159 79.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 3.0e-63 245.4 159 79.9
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 79.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 79.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 79.2
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 80.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 78.6
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 79.9
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 79.9
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.0e-63 245.0 159 80.5
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.2e-62 243.4 159 78.6
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.2e-62 243.4 159 77.4
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.5e-62 243.0 159 78.6
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.5e-62 243.0 159 80.5
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.0e-62 242.7 159 79.2
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 2.0e-62 242.7 159 77.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 3.4e-62 241.9 159 78.0
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.4e-62 241.5 159 79.2
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.4e-62 241.5 189 70.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.4e-62 241.5 159 78.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 5.7e-62 241.1 159 78.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.7e-62 241.1 159 78.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 7.5e-62 240.7 159 78.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 7.5e-62 240.7 159 79.2
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 9.8e-62 240.4 159 78.0
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 9.8e-62 240.4 159 78.0
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.7e-61 239.6 159 78.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.2e-61 239.2 159 78.6
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.2e-61 239.2 159 78.6
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.8e-61 238.8 159 77.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.8e-61 238.8 159 77.4
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.7e-61 238.4 159 78.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 4.9e-61 238.0 159 77.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 6.3e-61 237.7 159 78.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 8.3e-61 237.3 159 76.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.3e-61 237.3 159 77.4
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.8e-60 236.1 159 76.1
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.8e-60 236.1 159 78.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 9.1e-60 233.8 159 74.8
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.7e-59 232.3 169 73.4
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.5e-59 231.9 159 74.2
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.5e-59 231.5 159 74.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 5.0e-58 228.0 149 79.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 8.6e-58 227.3 160 74.4
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.3e-55 219.2 159 73.0
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.0e-55 218.8 159 73.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.2e-54 216.9 159 73.0
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 7.5e-54 214.2 159 66.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 9.8e-54 213.8 159 66.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.3e-53 213.4 159 67.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.2e-51 206.8 159 69.8
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.3e-49 198.7 147 72.8
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.7e-48 194.9 143 74.1
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.6e-46 189.1 128 77.3
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.4e-46 188.7 133 72.2
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.4e-46 188.7 159 66.7
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 7.5e-46 187.6 159 66.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.7e-45 185.3 128 75.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.4e-44 183.3 159 67.3
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.4e-44 182.6 129 73.6
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.2e-43 180.3 192 55.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 2.0e-43 179.5 129 72.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 9.5e-41 170.6 159 61.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.8e-39 166.4 159 59.1
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 5.8e-38 161.4 159 57.2
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.2e-37 159.5 179 53.1
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.2e-37 159.5 159 57.9
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 9.2e-36 154.1 106 78.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.7e-35 152.5 82 93.9
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.8e-35 151.0 81 91.4
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 7.8e-35 151.0 81 92.6
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.7e-34 149.8 84 89.3
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.9e-34 148.7 97 80.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.9e-34 148.7 97 80.4
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 6.6e-34 147.9 82 89.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 6.6e-34 147.9 81 91.4
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 6.6e-34 147.9 79 93.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 8.6e-34 147.5 79 93.7
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.6e-34 147.5 79 93.7
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.1e-33 147.1 103 74.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.5e-33 146.7 96 80.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.5e-33 146.7 82 89.0
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.5e-33 146.7 80 91.2
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.9e-33 146.4 79 92.4
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.9e-33 146.4 100 76.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-33 146.4 79 92.4
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.5e-33 146.0 82 87.8
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.5e-33 146.0 82 87.8
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.5e-33 146.0 82 90.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.3e-33 145.6 79 92.4
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 4.3e-33 145.2 84 86.9
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.6e-33 144.8 89 80.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.2e-32 143.7 87 83.9
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-32 143.3 79 88.6
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-32 143.3 82 86.6
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.6e-32 143.3 82 86.6
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.1e-32 142.9 79 88.6
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.1e-32 142.9 79 88.6
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.6e-32 142.1 81 88.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.6e-32 142.1 82 85.4
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 4.7e-32 141.7 78 91.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 4.7e-32 141.7 79 88.6
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.7e-32 141.7 79 88.6
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.7e-32 141.7 79 88.6
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 4.7e-32 141.7 103 72.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-31 140.6 79 87.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.1e-31 140.6 88 79.5
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.1e-31 140.6 165 41.8
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 3.4e-30 135.6 167 47.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 5.8e-30 134.8 129 60.5
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.7e-29 133.3 76 84.2
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.2e-28 127.5 62 96.8
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.6e-27 126.7 155 41.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.6e-27 126.7 151 41.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 7.8e-27 124.4 67 86.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 7.8e-27 124.4 149 50.3
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 4.7e-24 115.2 56 98.2
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 4.7e-24 115.2 56 98.2
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 4.7e-24 115.2 56 98.2
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.1e-23 114.0 56 94.6
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 1.4e-23 113.6 56 94.6
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 1.8e-23 113.2 56 96.4
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 1.8e-23 113.2 56 96.4
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 1.2e-22 110.5 56 94.6
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 6.4e-21 104.8 55 92.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.4e-20 101.7 74 74.3
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.4e-20 101.7 57 86.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 9.3e-20 100.9 56 87.5
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.6e-19 100.1 133 45.9
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.5e-19 99.0 75 58.7
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 4.4e-14 82.0 45 86.7
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.9e-13 79.3 40 90.0
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-09 66.2 41 80.5
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 4.3e-09 65.5 149 31.5
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.2e-06 57.4 29 93.1
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 3.4e-06 55.8 25 96.0


User provided reference genes

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