Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017595 Camellia sinensis var. sinensis HOM05D002995 ORTHO05D003319 2.4e-22 108.2 49 100.0
Dinv36799 Davidia involucrata HOM05D002995 ORTHO05D003319 1.0e-12 76.3 46 76.1
Actinidia39694 Actinidia chinensis HOM05D002995 ORTHO05D003319 1.4e-11 72.4 45 75.6
Rhsim05G0013900 Rhododendron simsii HOM05D002995 ORTHO05D003319 1.9e-11 72.0 44 77.3
MSTRG.19484 Avicennia marina HOM05D002995 ORTHO05D003319 5.5e-11 70.5 42 76.2
PGSC0003DMG400016079 Solanum tuberosum HOM05D002995 ORTHO05D003319 5.5e-11 70.5 44 77.3
SalBow6G1014 Salvia bowleyana HOM05D002995 ORTHO05D003319 1.2e-10 69.3 49 69.4
Haze_25953 Corylus avellana HOM05D002995 ORTHO05D003319 2.1e-10 68.6 39 76.9
Peaxi162Scf00353g00001 Petunia axillaris HOM05D002995 ORTHO05D003319 3.5e-10 67.8 47 70.2
Cfa003043 Carpinus fangiana HOM05D002995 ORTHO05D003319 4.6e-10 67.4 39 76.9
ClCG03G015340 Citrullus lanatus HOM05D002995 ORTHO05D003319 7.9e-10 66.6 44 68.2
Solyc07g041070.3 Solanum lycopersicum HOM05D002995 ORTHO05D003319 7.9e-10 66.6 40 77.5
Sopen07g020330 Solanum pennellii HOM05D002995 ORTHO05D003319 7.9e-10 66.6 40 77.5
Ah.09g231240 Amaranthus hybridus HOM05D002995 ORTHO05D003319 1.0e-09 66.2 40 72.5
Nitab4.5_0009954g0010 Nicotiana tabacum HOM05D002995 ORTHO05D003319 1.0e-09 66.2 47 68.1
Potri.006G145900 Populus trichocarpa HOM05D002995 ORTHO05D003319 1.0e-09 66.2 36 80.6
MD02G1085400 Malus domestica HOM05D002995 ORTHO05D003319 1.3e-09 65.9 42 76.2
CANSAT56G3219 Cannabis sativa HOM05D002995 ORTHO05D003319 1.8e-09 65.5 39 74.4
CANSAT56G3867 Cannabis sativa HOM05D002995 ORTHO05D003319 1.8e-09 65.5 39 74.4
COL.COLO4_18154 Corchorus olitorius HOM05D002995 ORTHO05D003319 1.8e-09 65.5 43 65.1
Gorai.009G034000 Gossypium raimondii HOM05D002995 ORTHO05D003319 1.8e-09 65.5 47 66.0
CANSAT56G0839 Cannabis sativa HOM05D002995 ORTHO05D003319 2.3e-09 65.1 39 74.4
CANSAT56G1782 Cannabis sativa HOM05D002995 ORTHO05D003319 2.3e-09 65.1 39 74.4
MELO3C015498.2 Cucumis melo HOM05D002995 ORTHO05D003319 2.3e-09 65.1 43 67.4
Gohir.D05G033600 Gossypium hirsutum HOM05D002995 ORTHO05D003319 2.3e-09 65.1 47 66.0
Manes.16G098800 Manihot esculenta HOM05D002995 ORTHO05D003319 2.3e-09 65.1 42 71.4
QL02p061749 Quercus lobata HOM05D002995 ORTHO05D003319 2.3e-09 65.1 36 80.6
FAN28G0926 Fragaria x ananassa HOM05D002995 ORTHO05D003319 3.0e-09 64.7 45 71.1
Nitab4.5_0000024g0020 Nicotiana tabacum HOM05D002995 ORTHO05D003319 3.9e-09 64.3 44 70.5
Nitab4.5_0002079g0050 Nicotiana tabacum HOM05D002995 ORTHO05D003319 3.9e-09 64.3 42 73.8
Nitab4.5_0002842g0010 Nicotiana tabacum HOM05D002995 ORTHO05D003319 3.9e-09 64.3 34 82.4
PGR142G1322 Punica granatum HOM05D002995 ORTHO05D003319 3.9e-09 64.3 37 73.0
Cc06_g11810 Coffea canephora HOM05D002995 ORTHO05D003319 5.1e-09 63.9 42 73.8
Gohir.A08G245700 Gossypium hirsutum HOM05D002995 ORTHO05D003319 5.1e-09 63.9 35 74.3
Gohir.D08G266700 Gossypium hirsutum HOM05D002995 ORTHO05D003319 5.1e-09 63.9 35 74.3
Gorai.004G284500 Gossypium raimondii HOM05D002995 ORTHO05D003319 5.1e-09 63.9 35 74.3
Oeu033213.1 Olea europaea HOM05D002995 ORTHO05D003319 6.7e-09 63.5 37 75.7
Prupe.7G204200 Prunus persica HOM05D002995 ORTHO05D003319 6.7e-09 63.5 34 82.4
GSVIVG01016820001 Vitis vinifera HOM05D002995 ORTHO05D003319 6.7e-09 63.5 44 63.6
FvH4_1g08080 Fragaria vesca HOM05D002995 ORTHO05D003319 8.7e-09 63.2 45 68.9
FAN26G0763 Fragaria x ananassa HOM05D002995 ORTHO05D003319 8.7e-09 63.2 45 68.9
FAN26G3271 Fragaria x ananassa HOM05D002995 ORTHO05D003319 8.7e-09 63.2 45 68.9
Sabra06G0115500 Salix brachista HOM05D002995 ORTHO05D003319 8.7e-09 63.2 36 77.8
SGA_v2.0_scaffold97G29155 Striga asiatica HOM05D002995 ORTHO05D003319 8.7e-09 63.2 42 71.4
TWI34G1727 Tripterygium wilfordii HOM05D002995 ORTHO05D003319 8.7e-09 63.2 31 87.1
Gohir.A05G032200 Gossypium hirsutum HOM05D002995 ORTHO05D003319 1.1e-08 62.8 47 63.8
RcHm_v2.0_Chr2g0094141 Rosa chinensis HOM05D002995 ORTHO05D003319 1.1e-08 62.8 45 68.9
Thecc.09G082700 Theobroma cacao HOM05D002995 ORTHO05D003319 1.1e-08 62.8 52 57.7
TAR413G0002 Trochodendron aralioides HOM05D002995 ORTHO05D003319 1.1e-08 62.8 46 60.9
Migut.J00559 Erythranthe guttata HOM05D002995 ORTHO05D003319 1.5e-08 62.4 42 66.7
Oeu010825.1 Olea europaea HOM05D002995 ORTHO05D003319 1.5e-08 62.4 42 64.3
FAN19G1307 Fragaria x ananassa HOM05D002995 ORTHO05D003319 1.9e-08 62.0 45 66.7
Sed0016575 Sechium edule HOM05D002995 ORTHO05D003319 2.5e-08 61.6 44 63.6
Sc08g0008690 Simmondsia chinensis HOM05D002995 ORTHO05D003319 2.5e-08 61.6 38 73.7
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 3.3e-08 61.2 44 63.6
DCAR_010501 Daucus carota HOM05D002995 ORTHO05D003319 3.3e-08 61.2 36 75.0
MD15G1212500 Malus domestica HOM05D002995 ORTHO05D003319 3.3e-08 61.2 34 76.5
Medtr2g040580 Medicago truncatula HOM05D002995 ORTHO05D003319 3.3e-08 61.2 40 67.5
Sed0003823 Sechium edule HOM05D002995 ORTHO05D003319 3.3e-08 61.2 43 65.1
FAN23G3008 Fragaria x ananassa HOM05D002995 ORTHO05D003319 4.3e-08 60.8 45 66.7
Lj7A681T61 Lonicera japonica HOM05D002995 ORTHO05D003319 4.3e-08 60.8 41 65.9
Carub.0008s1758 Capsella rubella HOM05D002995 ORTHO05D003319 7.4e-08 60.1 32 81.2
Ciclev10025206m.g Citrus clementina HOM05D002995 ORTHO05D003319 7.4e-08 60.1 43 67.4
Cpa.g.sc25.89 Carica papaya HOM05D002995 ORTHO05D003319 9.7e-08 59.7 43 62.8
Lsat_1_v5_gn_5_141561 Lactuca sativa HOM05D002995 ORTHO05D003319 9.7e-08 59.7 48 58.3
BcaC03g18570 Brassica carinata HOM05D002995 ORTHO05D003319 1.3e-07 59.3 42 66.7
C02p14670 Brassica napus HOM05D002995 ORTHO05D003319 1.3e-07 59.3 42 66.7
BolC2t07593H Brassica oleracea HOM05D002995 ORTHO05D003319 1.3e-07 59.3 42 66.7
TWI63G1002 Tripterygium wilfordii HOM05D002995 ORTHO05D003319 1.3e-07 59.3 43 65.1
BcaC04g20016 Brassica carinata HOM05D002995 ORTHO05D003319 1.6e-07 58.9 39 66.7
A10p14400 Brassica napus HOM05D002995 ORTHO05D003319 1.6e-07 58.9 39 66.7
C09p48760 Brassica napus HOM05D002995 ORTHO05D003319 1.6e-07 58.9 39 66.7
BolC9t57723H Brassica oleracea HOM05D002995 ORTHO05D003319 1.6e-07 58.9 39 66.7
BraA10t43532Z Brassica rapa HOM05D002995 ORTHO05D003319 1.6e-07 58.9 39 66.7
Aa31LG3G12970 Aethionema arabicum HOM05D002995 ORTHO05D003319 2.2e-07 58.5 43 65.1
Dinv30367 Davidia involucrata HOM05D002995 ORTHO05D002742 2.2e-07 58.5 41 58.5
Duzib150G1106 Durio zibethinus HOM05D002995 ORTHO05D003319 2.2e-07 58.5 37 64.9
FvH4_6g34220 Fragaria vesca HOM05D002995 ORTHO05D003319 2.2e-07 58.5 35 77.1
FAN05G1863 Fragaria x ananassa HOM05D002995 ORTHO05D003319 2.2e-07 58.5 35 77.1
FAN09G3175 Fragaria x ananassa HOM05D002995 ORTHO05D003319 2.2e-07 58.5 35 77.1
Lj6g0008206 Lotus japonicus HOM05D002995 ORTHO05D003319 2.2e-07 58.5 36 72.2
Thecc.06G116400 Theobroma cacao HOM05D002995 ORTHO05D003319 2.2e-07 58.5 42 64.3
BcaB08g36011 Brassica carinata HOM05D002995 ORTHO05D003319 2.8e-07 58.2 31 80.6
Oeu010824.1 Olea europaea HOM05D002995 ORTHO05D003319 2.8e-07 58.2 42 61.9
THA.LOC104811758 Tarenaya hassleriana HOM05D002995 ORTHO05D003319 2.8e-07 58.2 48 58.3
Gohir.A10G057200 Gossypium hirsutum HOM05D002995 ORTHO05D003319 3.7e-07 57.8 42 61.9
arahy.Tifrunner.gnm1.ann1.Y3EBK0 Arachis hypogaea HOM05D002995 ORTHO05D003319 4.8e-07 57.4 40 62.5
Duzib168G1660 Durio zibethinus HOM05D002995 ORTHO05D003319 4.8e-07 57.4 54 51.9
Prupe.3G044600 Prunus persica HOM05D002995 ORTHO05D003319 4.8e-07 57.4 40 70.0
BcaB05g22313 Brassica carinata HOM05D002995 ORTHO05D003319 6.3e-07 57.0 42 61.9
RcHm_v2.0_Chr2g0144551 Rosa chinensis HOM05D002995 ORTHO05D003319 6.3e-07 57.0 35 74.3
Thhalv10013114m.g Eutrema salsugineum HOM05D002995 ORTHO05D003319 8.2e-07 56.6 41 65.9
MD17G1172100 Malus domestica HOM05D002995 ORTHO05D003319 8.2e-07 56.6 38 68.4
Manes.03G037400 Manihot esculenta HOM05D002995 ORTHO05D003319 8.2e-07 56.6 32 75.0
Gorai.011G063000 Gossypium raimondii HOM05D002995 ORTHO05D003319 1.1e-06 56.2 42 61.9
A02p08740 Brassica napus HOM05D002995 ORTHO05D003319 1.4e-06 55.8 42 61.9
BraA02t05944Z Brassica rapa HOM05D002995 ORTHO05D003319 1.4e-06 55.8 42 61.9
CiPaw.02G137600 Carya illinoinensis HOM05D002995 ORTHO05D003319 1.4e-06 55.8 35 71.4
Lalb_Chr11g0074441 Lupinus albus HOM05D002995 ORTHO05D003319 1.4e-06 55.8 40 62.5
Sp6g18790 Schrenkiella parvula HOM05D002995 ORTHO05D003319 1.4e-06 55.8 38 71.1
AL8G32980 Arabidopsis lyrata HOM05D002995 ORTHO05D003319 1.8e-06 55.5 39 66.7
Atru.chr1.3809 Acer truncatum HOM05D002995 ORTHO05D003319 2.4e-06 55.1 41 61.0
QL09p052593 Quercus lobata HOM05D000003 ORTHO05D000004 2.4e-06 55.1 30 76.7
Glyma.09G067000 Glycine max HOM05D002995 ORTHO05D003319 3.1e-06 54.7 34 70.6
Glyma.15G172900 Glycine max HOM05D002995 ORTHO05D003319 3.1e-06 54.7 34 70.6
ATR0051G030 Amborella trichopoda HOM05D002995 ORTHO05D003319 5.3e-06 53.9 38 60.5
Aqoxy7G01134 Aquilegia oxysepala HOM05D002995 ORTHO05D003319 5.3e-06 53.9 44 54.5
AT5G57070 Arabidopsis thaliana HOM05D002995 ORTHO05D003319 5.3e-06 53.9 38 68.4
CARHR270830 Cardamine hirsuta HOM05D002995 ORTHO05D003319 5.3e-06 53.9 38 65.8
Ca_13141_v3 Cicer arietinum L. HOM05D002995 ORTHO05D003319 5.3e-06 53.9 37 62.2
COL.COLO4_30709 Corchorus olitorius HOM05D002995 ORTHO05D003319 5.3e-06 53.9 43 60.5
HanXRQChr12g0353971 Helianthus annuus HOM05D002995 ORTHO05D003319 5.3e-06 53.9 54 50.0
Manes.11G022900 Manihot esculenta HOM05D002995 ORTHO05D003319 5.3e-06 53.9 40 60.0
Psat1g133200 Pisum sativum HOM05D002995 ORTHO05D003319 6.9e-06 53.5 39 61.5


User provided reference genes

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