Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017585 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 8.6e-108 393.7 199 100.0
CSS0024490 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 4.4e-59 231.9 168 76.2
CSS0044057 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 9.7e-59 230.7 168 75.0
Rhsim09G0145300 Rhododendron simsii HOM05D005700 ORTHO05D007035 6.5e-55 218.0 212 59.9
Hma1.2p1_0454F.1_g156240 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 1.4e-54 216.9 187 64.2
CSS0044078 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 2.5e-54 216.1 168 70.8
Nitab4.5_0000096g0200 Nicotiana tabacum HOM05D005700 ORTHO05D007035 1.6e-53 213.4 187 63.6
Actinidia38892 Actinidia chinensis HOM05D005700 ORTHO05D007035 3.6e-53 212.2 168 69.6
FAN10G0584 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.0e-52 210.7 205 58.0
Actinidia34788 Actinidia chinensis HOM05D005700 ORTHO05D007035 2.3e-52 209.5 168 69.0
FAN03G2335 Fragaria x ananassa HOM05D005700 ORTHO05D007035 3.9e-52 208.8 185 61.6
vmacro10263 Vaccinium macrocarpon HOM05D005700 ORTHO05D007035 6.7e-52 208.0 168 68.5
Dinv31263 Davidia involucrata HOM05D005700 ORTHO05D007035 9.7e-51 204.1 169 68.0
Hma1.2p1_0454F.1_g156230 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 9.7e-51 204.1 168 66.7
Lj2A24T67 Lonicera japonica HOM05D005700 ORTHO05D007035 9.7e-51 204.1 169 66.3
PGSC0003DMG400023376 Solanum tuberosum HOM05D005700 ORTHO05D007035 3.7e-50 202.2 168 66.1
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 6.3e-50 201.4 168 65.5
Gohir.D04G021400 Gossypium hirsutum HOM05D005700 ORTHO05D007035 6.3e-50 201.4 168 64.9
Duzib106G0901 Durio zibethinus HOM05D005700 ORTHO05D007035 1.1e-49 200.7 168 63.7
Gohir.A05G393500 Gossypium hirsutum HOM05D005700 ORTHO05D007035 1.1e-49 200.7 168 64.3
Sopen05g033880 Solanum pennellii HOM05D005700 ORTHO05D007035 1.1e-49 200.7 168 65.5
Migut.F01676 Erythranthe guttata HOM05D005700 ORTHO05D007035 1.4e-49 200.3 168 64.3
Oeu046658.1 Olea europaea HOM05D005700 ORTHO05D007035 1.4e-49 200.3 168 63.7
Haze_16777 Corylus avellana HOM05D005700 ORTHO05D007035 1.8e-49 199.9 168 65.5
Peaxi162Scf01201g00017 Petunia axillaris HOM05D005700 ORTHO05D007035 1.8e-49 199.9 168 65.5
Gorai.012G025500 Gossypium raimondii HOM05D005700 ORTHO05D007035 2.4e-49 199.5 168 64.3
RcHm_v2.0_Chr1g0336111 Rosa chinensis HOM05D005700 ORTHO05D007035 2.4e-49 199.5 168 64.9
Prupe.2G094500 Prunus persica HOM05D005700 ORTHO05D007035 4.1e-49 198.7 168 64.9
GSVIVG01016163001 Vitis vinifera HOM05D005700 ORTHO05D007035 4.1e-49 198.7 168 65.5
Atru.chr12.910 Acer truncatum HOM05D005700 ORTHO05D007035 7.0e-49 198.0 168 64.3
CAN.G1891.6 Capsicum annuum HOM05D005700 ORTHO05D007035 7.0e-49 198.0 168 64.3
FvH4_7g06650 Fragaria vesca HOM05D005700 ORTHO05D007035 7.0e-49 198.0 168 64.3
Nn3g19086 Nelumbo nucifera HOM05D005700 ORTHO05D007035 7.0e-49 198.0 168 64.9
CiPaw.02G170000 Carya illinoinensis HOM05D005700 ORTHO05D007035 9.1e-49 197.6 168 63.7
Thecc.10G089800 Theobroma cacao HOM05D005700 ORTHO05D007035 1.2e-48 197.2 168 63.7
ClCG08G007920 Citrullus lanatus HOM05D005700 ORTHO05D007035 2.0e-48 196.4 180 60.6
Ciclev10032582m.g Citrus clementina HOM05D005700 ORTHO05D007035 2.0e-48 196.4 168 61.3
Manes.11G085375 Manihot esculenta HOM05D005700 ORTHO05D007035 2.0e-48 196.4 168 64.3
Solyc05g055430.4 Solanum lycopersicum HOM05D005700 ORTHO05D007035 2.0e-48 196.4 168 64.3
THA.LOC104823196 Tarenaya hassleriana HOM05D005700 ORTHO05D007035 2.6e-48 196.1 168 64.3
TAR369G0971 Trochodendron aralioides HOM05D005700 ORTHO05D007035 2.6e-48 196.1 168 64.3
ECA238G2005 Erigeron canadensis HOM05D005700 ORTHO05D007035 3.5e-48 195.7 168 63.1
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 4.5e-48 195.3 168 64.3
Aa31LG11G5310 Aethionema arabicum HOM05D005700 ORTHO05D007035 7.7e-48 194.5 168 62.5
Thhalv10014494m.g Eutrema salsugineum HOM05D005700 ORTHO05D007035 7.7e-48 194.5 168 63.7
AT5G04440 Arabidopsis thaliana HOM05D005700 ORTHO05D007035 1.3e-47 193.7 168 63.1
COL.COLO4_32883 Corchorus olitorius HOM05D005700 ORTHO05D007035 1.3e-47 193.7 168 64.3
HanXRQChr14g0456161 Helianthus annuus HOM05D005700 ORTHO05D007035 1.7e-47 193.4 169 63.3
Potri.008G030300 Populus trichocarpa HOM05D005700 ORTHO05D007035 1.7e-47 193.4 168 61.9
Potri.010G230900 Populus trichocarpa HOM05D005700 ORTHO05D007035 1.7e-47 193.4 168 61.9
SalBow6G6710 Salvia bowleyana HOM05D005700 ORTHO05D007035 1.7e-47 193.4 168 62.5
BcaC06g32152 Brassica carinata HOM05D005700 ORTHO05D007035 2.2e-47 193.0 168 63.1
Sp6g38300 Schrenkiella parvula HOM05D005700 ORTHO05D007035 2.2e-47 193.0 168 63.1
A10p31640 Brassica napus HOM05D005700 ORTHO05D007035 3.8e-47 192.2 168 63.1
BraA10t45210Z Brassica rapa HOM05D005700 ORTHO05D007035 3.8e-47 192.2 168 63.1
Nn6g35199 Nelumbo nucifera HOM05D005700 ORTHO05D007035 5.0e-47 191.8 168 64.3
Sc20g0001510 Simmondsia chinensis HOM05D005700 ORTHO05D007035 8.5e-47 191.0 168 61.9
Carub.0006s0338 Capsella rubella HOM05D005700 ORTHO05D007035 1.1e-46 190.7 168 61.9
PGR142G0169 Punica granatum HOM05D005700 ORTHO05D007035 1.5e-46 190.3 168 61.9
AL6G14080 Arabidopsis lyrata HOM05D005700 ORTHO05D007035 1.9e-46 189.9 168 61.9
HanXRQChr11g0335951 Helianthus annuus HOM05D005700 ORTHO05D007035 2.5e-46 189.5 168 61.9
Hund06763 Selenicereus undatus HOM05D005700 ORTHO05D007035 3.2e-46 189.1 244 48.0
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 4.2e-46 188.7 168 62.5
MD07G1074500 Malus domestica HOM05D005700 ORTHO05D007035 7.2e-46 188.0 168 63.7
Cpa.g.sc53.169 Carica papaya HOM05D005700 ORTHO05D007035 1.2e-45 187.2 168 60.7
Lsat_1_v5_gn_2_103220 Lactuca sativa HOM05D005700 ORTHO05D007035 1.2e-45 187.2 169 61.5
Lalb_Chr01g0010291 Lupinus albus HOM05D005700 ORTHO05D007035 1.2e-45 187.2 168 59.5
Sabra10G0179000 Salix brachista HOM05D005700 ORTHO05D007035 1.2e-45 187.2 168 60.7
PSO063G2079 Papaver somniferum HOM05D005700 ORTHO05D007035 2.1e-45 186.4 168 60.7
Sed0026830 Sechium edule HOM05D005700 ORTHO05D007035 2.1e-45 186.4 168 61.9
Aqoxy1G01068 Aquilegia oxysepala HOM05D005700 ORTHO05D007035 2.7e-45 186.0 168 62.5
MSTRG.400 Avicennia marina HOM05D005700 ORTHO05D007035 3.6e-45 185.7 168 60.1
Sed0005120 Sechium edule HOM05D005700 ORTHO05D007035 3.6e-45 185.7 170 60.6
Cc02_g10560 Coffea canephora HOM05D005700 ORTHO05D007035 4.7e-45 185.3 168 61.3
PSO339G4237 Papaver somniferum HOM05D005700 ORTHO05D007035 6.1e-45 184.9 168 60.1
MELO3C019851.2 Cucumis melo HOM05D005700 ORTHO05D007035 8.0e-45 184.5 189 55.6
EL10Ac4g08634 Beta vulgaris HOM05D005700 ORTHO05D007035 1.0e-44 184.1 168 59.5
Medtr1g050530 Medicago truncatula HOM05D005700 ORTHO05D007035 1.0e-44 184.1 168 60.1
ATR0043G051 Amborella trichopoda HOM05D005700 ORTHO05D007035 1.8e-44 183.3 168 60.7
SGA_v2.0_scaffold41G15744 Striga asiatica HOM05D005700 ORTHO05D007035 2.3e-44 183.0 221 49.3
Ca_26010_v3 Cicer arietinum L. HOM05D005700 ORTHO05D007035 4.0e-44 182.2 168 58.9
Phvul.007G244000 Phaseolus vulgaris HOM05D005700 ORTHO05D007035 5.2e-44 181.8 168 58.9
VMungo0720G2730 Vigna mungo HOM05D005700 ORTHO05D007035 5.2e-44 181.8 168 57.7
Psat6g095240 Pisum sativum HOM05D005700 ORTHO05D007035 1.2e-43 180.6 168 58.9
Lj1g0010858 Lotus japonicus HOM05D005700 ORTHO05D007035 7.5e-43 177.9 168 57.7
Zm00001eb003780 Zea mays HOM05D005700 ORTHO05D007035 7.5e-43 177.9 167 57.5
Glyma.10G102440 Glycine max HOM05D005700 ORTHO05D007035 1.3e-42 177.2 168 58.3
Glyma.U031112 Glycine max HOM05D005700 ORTHO05D007035 1.3e-42 177.2 168 58.3
CANSAT56G1373 Cannabis sativa HOM05D005700 ORTHO05D007035 3.7e-42 175.6 169 60.4
CDE09G1384 Ceratophyllum demersum HOM05D005700 ORTHO05D007035 4.8e-42 175.3 168 56.5
Lj1g0018185 Lotus japonicus HOM05D005700 ORTHO05D007035 4.8e-42 175.3 167 57.5
C09p72310 Brassica napus HOM05D005700 ORTHO05D007035 1.1e-41 174.1 159 61.0
BolC9t59975H Brassica oleracea HOM05D005700 ORTHO05D007035 1.1e-41 174.1 159 61.0
TWI38G0818 Tripterygium wilfordii HOM05D005700 ORTHO05D007035 2.7e-40 169.5 156 59.6
HPP92_004967 Vanilla planifolia HOM05D005700 ORTHO05D007035 1.1e-38 164.1 168 52.4
SMO196G0037 Selaginella moellendorffii HOM05D005700 ORTHO05D007035 1.6e-37 160.2 168 53.6
AagrBONN_evm.TU.Sc2ySwM_228.955 Anthoceros agrestis HOM05D005700 ORTHO05D007035 1.6e-32 143.7 168 47.0
Mapoly0083s0065 Marchantia polymorpha HOM05D005700 ORTHO05D007035 1.6e-32 143.7 168 50.0
arahy.Tifrunner.gnm1.ann1.U7ZK73 Arachis hypogaea HOM05D005700 ORTHO05D007035 7.7e-32 141.4 208 45.7
Pp3c1_19240 Physcomitrium patens HOM05D005700 ORTHO05D007035 1.3e-31 140.6 168 45.8
MBI11_g29032_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 3.6e-29 132.5 169 46.2
FAN10G1117 Fragaria x ananassa HOM05D005700 ORTHO05D007035 3.0e-28 129.4 113 61.1
Sabra08G0020300 Salix brachista HOM05D000437 ORTHO05D000324 4.0e-28 129.0 90 71.1
CBR_g10878 Chara braunii HOM05D005700 ORTHO05D007035 2.0e-27 126.7 168 44.6
Nitab4.5_0002692g0080 Nicotiana tabacum HOM05D005700 ORTHO05D007035 9.8e-27 124.4 89 70.8
CARHR208820 Cardamine hirsuta HOM05D005700 ORTHO05D007035 1.7e-26 123.6 88 71.6
CsaV3_2G032730 Cucumis sativus L. HOM05D005700 ORTHO05D007035 1.4e-25 120.6 91 65.9
Os03g0146500 Oryza sativa ssp. japonica HOM05D005700 ORTHO05D007035 7.8e-24 114.8 90 64.4
Glyma.02G164300 Glycine max HOM05D005700 ORTHO05D007035 1.3e-23 114.0 90 63.3
C03p02060 Brassica napus HOM05D005700 ORTHO05D007035 5.0e-23 112.1 130 51.5
arahy.Tifrunner.gnm1.ann1.D7GKH1 Arachis hypogaea HOM05D005700 ORTHO05D007035 6.6e-23 111.7 90 62.2
BolC3t12759H Brassica oleracea HOM05D005700 ORTHO05D007035 4.0e-20 102.4 170 41.8
PRCOL_00003535 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 4.0e-20 102.4 168 36.3
SEGI_20571 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 1.2e-19 100.9 93 60.2
AUR62022764 Chenopodium quinoa HOM05D005700 ORTHO05D007035 9.8e-19 97.8 78 65.4
Hma1.2p1_1040F.1_g250960 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 2.2e-18 96.7 95 55.8
AUR62029215 Chenopodium quinoa HOM05D005700 ORTHO05D007035 6.4e-18 95.1 78 64.1
Cre06.g264550 Chlamydomonas reinhardtii HOM05D005700 ORTHO05D007035 1.4e-17 94.0 180 36.1
arahy.Tifrunner.gnm1.ann1.PLH1MA Arachis hypogaea HOM05D005700 ORTHO05D007035 2.0e-16 90.1 70 70.0
BcaB01g05899 Brassica carinata HOM05D005700 ORTHO05D007035 1.0e-15 87.8 72 62.5
MBI19_g03561_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 3.0e-15 86.3 70 61.4
A03p01690 Brassica napus HOM05D005700 ORTHO05D007035 5.6e-14 82.0 65 64.6
unitig_749.g13568 Utricularia gibba HOM05D005700 ORTHO05D007035 7.3e-14 81.6 76 59.2
BcaB01g05900 Brassica carinata HOM05D005700 ORTHO05D007035 1.6e-13 80.5 65 64.6
MBI11_g23276_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 1.4e-12 77.4 70 57.1
BraA03t09544Z Brassica rapa HOM05D005700 ORTHO05D007035 2.3e-12 76.6 65 61.5
MCO14G381 Micromonas commoda HOM05D005700 ORTHO05D007035 3.1e-12 76.3 169 32.0
Zm00001eb006030 Zea mays HOM05D005700 ORTHO05D007035 2.6e-11 73.2 92 48.9
SEGI_13772 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 4.4e-11 72.4 70 55.7
Zm00001eb313560 Zea mays HOM05D005700 ORTHO05D007035 9.8e-11 71.2 62 59.7
ECA233G6102 Erigeron canadensis HOM05D005700 ORTHO05D007035 8.6e-07 58.2 64 53.1


User provided reference genes

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